View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_27 (Length: 240)
Name: NF9937_low_27
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 14810549 - 14810771
Alignment:
| Q |
1 |
ccctcagcatagacctacgaataaagacacgaccgtaaacatacaaataacacaaaatcagaatacaaaagaacaacgataaaacatccttacttagact |
100 |
Q |
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| T |
14810549 |
ccctcagcatagacctacgaataaagacacgaccgtaaacatacaaataacacaaaatcagaatacaaaagaacaaggataaaacatccttacttagact |
14810648 |
T |
|
| Q |
101 |
tcactgcaaacgtgttgcgcccacaaagatcacactagtagagtccatcacgaactttcatacagtttccgcagtcccacatcagaaaccaccactgatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||| |
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| T |
14810649 |
tcactgcaaacgtgttgcgcccacaaagatcacactagtagagtccatcacgaactttcatgcagtttccgcagtcacacatcgaaaaccaccactgatc |
14810748 |
T |
|
| Q |
201 |
cacctgaaaatagccaacaattc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
14810749 |
cacctgaaaatagccaacaattc |
14810771 |
T |
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