View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_29 (Length: 238)
Name: NF9937_low_29
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35061280 - 35061058
Alignment:
| Q |
1 |
tattgtagccatagaaaagaagcaagaaaatacagcattgatataacacaatagtccaaactcaatttttagccgcatccatgcatgcattctccaatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061280 |
tattgtagccatagaaaagaagcaagaaaatacagcattgatataacacaatagtccaaactcaatttttagccgcatccatgcatgcattctccaatat |
35061181 |
T |
|
| Q |
101 |
atcatccaaaaatttccttagattcttttctgcaggaccaccttccttccctgcctctctagccaaccccttccatttcattgcattctttctcaattcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35061180 |
atcatccaaaaatttccttagattcttttctgcaggaccaccttccttccctgcctctctagccaaccccttccatttcattgcattctttctcaattcc |
35061081 |
T |
|
| Q |
201 |
tctcctttctctcctcttcccat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
35061080 |
tctcctttctctcctcttcccat |
35061058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 35054440 - 35054320
Alignment:
| Q |
103 |
catccaaaaatttccttagattcttttctgcaggaccaccttccttccctgcctctctagccaaccccttccatttcattgcattctttctcaattcctc |
202 |
Q |
| |
|
|||||||||| |||| ||||||||||||| || |||||||||||| |||| |||||||||||| ||||||||||| || || || ||||||||||||| |
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| T |
35054440 |
catccaaaaaactcctcagattcttttctgaagagccaccttccttcactgcttctctagccaactccttccatttctttccactccttctcaattcctc |
35054341 |
T |
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| Q |
203 |
tcctttctctcctcttcccat |
223 |
Q |
| |
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|||||||||||| || ||||| |
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| T |
35054340 |
tcctttctctccactccccat |
35054320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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