View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_3 (Length: 590)
Name: NF9937_low_3
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_3 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 20 - 571
Target Start/End: Complemental strand, 12308978 - 12308427
Alignment:
| Q |
20 |
atcaggttagtgaatcactcaacaaattttcggaaagaatagaaaaggagacaggaaatggtgtgaaatacaatacttgtatcttttgctcgtcgcagta |
119 |
Q |
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| T |
12308978 |
atcaggttagtgaatcactcaacaaattttccgaaagaatagaaaaggagacaggaaatggtgtgaaatacaatacttgtatcttttgctcgtcgcagta |
12308879 |
T |
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| Q |
120 |
aaaataaataaaattcgttcccagaactggttgccaggtaagttttcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcattttca |
219 |
Q |
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| T |
12308878 |
aaaataaataaaattcgttcccagaactggttgccaggtaagttttcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcattttca |
12308779 |
T |
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| Q |
220 |
ggacagacatagctgctacacatcctcctaccatcaaagattgaagcaagttgcttactcgctgttcttcaacctcaacaggcaataagtcatcaatttc |
319 |
Q |
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| T |
12308778 |
ggacagacatagctgctacacatcctcctaccatcaaagattgaagcaagttgcttactcgctgttcttcaacctcaacaggcaataagtcatcaatttc |
12308679 |
T |
|
| Q |
320 |
tttctcaatatcaaatattgactcgtcaactgcattatttaagtttcccgtacttgatgccaattgaatagttgattctttcaactcttttaatccctgt |
419 |
Q |
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| T |
12308678 |
tttctcaatatcaaatattgactcgtcaactgcattatttaagcttcccgtacttgatgccaattgaatagttgattctttcaactcttttaatccctat |
12308579 |
T |
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| Q |
420 |
caaaacaaagttagccaagattttggatgattatagtattcagttttttaaaacatatgaaaaaattacacgacgaaagattcttttgtatctgtcctag |
519 |
Q |
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| T |
12308578 |
caaaacaaagttagccaagattttggatgattatagtattcagtttgttaaaacatatgaaaaaattacacgacgaaagattcttttgtatctgtcctag |
12308479 |
T |
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| Q |
520 |
acttgtggctgtcaaaatagaacttaaaaattatactccaaaaaattgctat |
571 |
Q |
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| T |
12308478 |
acatgtggctgtcaaaacagaacttaaaaactatactccagaaaattgctat |
12308427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 325
Target Start/End: Complemental strand, 45080330 - 45080142
Alignment:
| Q |
137 |
ttcccagaactggttgccaggtaagttttcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcattttcaggacagacatagctgct |
236 |
Q |
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|||||| |||||||| |||||||| ||||||| ||||| || |||||||| ||||| | ||| || ||||| || | || || | || ||| ||||| |
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| T |
45080330 |
ttcccaaaactggtttccaggtaaactttcaattgccataaaggcaaagtagccccaaagtactgaagttgggattttcttgagaataggcatggctgca |
45080231 |
T |
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| Q |
237 |
acacatcctcctaccatcaaagattgaagcaagttgcttactcgctgttcttcaacctcaacaggcaataagtcatcaatttctttctc |
325 |
Q |
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| T |
45080230 |
acacatcctccaaccaatactgattgaagcaagttactgacacgttgttcctttacctcaacaggaagcaagtcatctatttctttctc |
45080142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0459 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 5848 - 5900
Alignment:
| Q |
165 |
tcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcatttt |
217 |
Q |
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||||| |||||| ||||||||||||||||||| || || ||||| |||||||| |
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| T |
5848 |
tcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttt |
5900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 5848 - 5900
Alignment:
| Q |
165 |
tcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcatttt |
217 |
Q |
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| T |
5848 |
tcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttt |
5900 |
T |
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