View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9937_low_32 (Length: 219)

Name: NF9937_low_32
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9937_low_32
NF9937_low_32
[»] chr3 (9 HSPs)
chr3 (18-205)||(25388408-25388594)
chr3 (50-173)||(35537206-35537332)
chr3 (121-173)||(43121243-43121295)
chr3 (121-205)||(9510272-9510355)
chr3 (121-205)||(9518247-9518330)
chr3 (132-173)||(8130474-8130515)
chr3 (132-173)||(21740099-21740140)
chr3 (121-174)||(23819083-23819136)
chr3 (132-173)||(47537791-47537832)
[»] chr6 (9 HSPs)
chr6 (121-205)||(900398-900482)
chr6 (127-205)||(34180449-34180527)
chr6 (129-205)||(10920001-10920077)
chr6 (121-173)||(19256152-19256204)
chr6 (132-174)||(649641-649683)
chr6 (132-173)||(11060438-11060479)
chr6 (132-173)||(17078766-17078807)
chr6 (132-173)||(18051025-18051066)
chr6 (132-173)||(32186206-32186247)
[»] chr7 (10 HSPs)
chr7 (107-205)||(12308659-12308757)
chr7 (121-205)||(23054508-23054592)
chr7 (165-205)||(11341359-11341399)
chr7 (103-189)||(8752949-8753035)
chr7 (134-191)||(39658939-39658996)
chr7 (121-173)||(13553760-13553812)
chr7 (132-174)||(34232222-34232264)
chr7 (130-174)||(4077796-4077840)
chr7 (18-46)||(20349374-20349402)
chr7 (121-153)||(28173572-28173604)
[»] chr5 (18 HSPs)
chr5 (131-205)||(23923415-23923489)
chr5 (114-174)||(7000355-7000415)
chr5 (18-75)||(29572523-29572580)
chr5 (18-75)||(29573900-29573957)
chr5 (18-75)||(29575277-29575334)
chr5 (18-75)||(29576654-29576711)
chr5 (18-75)||(29578031-29578088)
chr5 (18-75)||(29579408-29579465)
chr5 (121-173)||(15862253-15862305)
chr5 (165-205)||(29572409-29572449)
chr5 (165-205)||(29573786-29573826)
chr5 (165-205)||(29575163-29575203)
chr5 (165-205)||(29576540-29576580)
chr5 (165-205)||(29577917-29577957)
chr5 (165-205)||(29579294-29579334)
chr5 (131-174)||(588036-588079)
chr5 (114-203)||(18896061-18896150)
chr5 (121-174)||(31864308-31864361)
[»] chr8 (8 HSPs)
chr8 (121-173)||(36157666-36157718)
chr8 (139-190)||(15439654-15439705)
chr8 (139-190)||(15530958-15531009)
chr8 (129-171)||(28992807-28992849)
chr8 (117-166)||(4987648-4987697)
chr8 (140-189)||(12332386-12332435)
chr8 (132-173)||(17659354-17659395)
chr8 (121-173)||(4310418-4310470)
[»] chr2 (5 HSPs)
chr2 (121-173)||(9668582-9668634)
chr2 (138-188)||(43722587-43722637)
chr2 (121-174)||(25380962-25381015)
chr2 (121-173)||(11028382-11028434)
chr2 (132-173)||(11234055-11234096)
[»] chr1 (6 HSPs)
chr1 (121-173)||(20796180-20796232)
chr1 (121-173)||(39430789-39430841)
chr1 (121-173)||(49264540-49264592)
chr1 (166-206)||(27393485-27393525)
chr1 (132-173)||(25504570-25504611)
chr1 (18-58)||(37530976-37531016)
[»] chr4 (6 HSPs)
chr4 (132-173)||(10562909-10562950)
chr4 (132-174)||(53780568-53780610)
chr4 (132-173)||(19114959-19115000)
chr4 (121-174)||(19648221-19648274)
chr4 (18-47)||(48497753-48497782)
chr4 (121-173)||(40688578-40688630)
[»] scaffold0048 (1 HSPs)
scaffold0048 (134-189)||(63852-63907)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 25388594 - 25388408
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatcacccgcctttcgcgacacactctttgtaaaccaacctttccccatcctcaccaacgccgt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||    
T  25388594 ctaaccacctatcataccaaaagaaagtatcagccccatcacccacctttcgcgacaccctctctgtaaaccaacctt-ccccatcctcaccaacgcggt 25388496  T
Q  118 ccttaatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |  |||||||||| ||||||||    
T  25388495 ccttaatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgcctccttatgatacctagcaaccaacacc 25388408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 35537206 - 35537332
Alignment:
Q  50 gccccatcacccgcctttcgcgacacactctttgtaaaccaacctt---tccccatcctcaccaacgccgtccttaatcctagccacctccctccaccaa 146  Q
    |||||||| | | ||||||||||||| |||| || ||||||||| |   ||||| || ||||| ||  ||||| |||||||  |||||||||||||||||    
T  35537206 gccccatccctcacctttcgcgacaccctctctgaaaaccaaccatacatccccctcttcacctacatcgtccctaatcctcaccacctccctccaccaa 35537305  T
Q  147 taagaaccactctggcccccaacctcc 173  Q
    |||||| ||||| ||||||||||||||    
T  35537306 taagaatcactccggcccccaacctcc 35537332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 43121295 - 43121243
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||| |||||||||||||||||| |||||| |||| ||||||||||||||    
T  43121295 taatcctcgccacctccctccaccaagaagaacaactccggcccccaacctcc 43121243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 9510272 - 9510355
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    ||||||||||||||||||||| ||||||| ||||||||  | | |||| || ||  || ||||||||||||| ||||||||||||    
T  9510272 taatcctagccacctccctcctccaataataaccactccagtctccaa-cttccaacctcctcaccataccttgcagccaacacc 9510355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 205
Target Start/End: Original strand, 9518247 - 9518330
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    ||||||||||||||||||||| ||||||| ||||||||  | | |||| || ||  || ||||||||||||| ||||||||||||    
T  9518247 taatcctagccacctccctcctccaataataaccactccagtctccaa-cttccaacctcctcaccataccttgcagccaacacc 9518330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 8130474 - 8130515
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||| |||||||| ||||||||||| ||||||||||||||    
T  8130474 acctccttccaccaaaaagaaccactccggcccccaacctcc 8130515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 21740140 - 21740099
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| |||||| |||| ||||||||||||||    
T  21740140 acctccctccaccaagaagaacaactccggcccccaacctcc 21740099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 23819083 - 23819136
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    ||||||| |||||||||||||||| | |||||| |||| | |||||||||||||    
T  23819083 taatcctcgccacctccctccacctagaagaacaactccgacccccaacctccc 23819136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 47537791 - 47537832
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| |||||| ||||||||||| |||||||    
T  47537791 acctccctccaccaagaagaacaactctggcccctaacctcc 47537832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 900482 - 900398
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  900482 taatcctagccaactccctccactaataagaacaactctggcccccaacctccctgcctcctcaccgtacctagcagccaacacc 900398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 127 - 205
Target Start/End: Original strand, 34180449 - 34180527
Alignment:
Q  127 tagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| | |||| |||||||||| |||||||||||||||    
T  34180449 tagccacctccctccaccaataagaaccattctgggccccaaccttcatgcctcctcaccatatctagcagccaacacc 34180527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 10920077 - 10920001
Alignment:
Q  129 gccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||||| ||||||| ||||| ||||  ||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  10920077 gccacctcccgccaccaagaagaatcacttcggcccccaacctccccgcctcctcaccatacctagcaaccaacacc 10920001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 19256152 - 19256204
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||  ||||||||| ||||||| |||||| |||||||||||||||||||    
T  19256152 taatcctccccacctcccgccaccaagaagaacaactctggcccccaacctcc 19256204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 649683 - 649641
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    ||||||||||||||| |||||| |||| |||||||||||||||    
T  649683 acctccctccaccaagaagaacaactccggcccccaacctccc 649641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 11060479 - 11060438
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| |||||| |||| ||||||||||||||    
T  11060479 acctccctccaccaagaagaacaactccggcccccaacctcc 11060438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 17078807 - 17078766
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| |||||| |||| ||||||||||||||    
T  17078807 acctccctccaccaagaagaacaactccggcccccaacctcc 17078766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 18051066 - 18051025
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| |||||| |||| ||||||||||||||    
T  18051066 acctccctccaccaagaagaacaactccggcccccaacctcc 18051025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 32186206 - 32186247
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||    
T  32186206 acctccctccaccaagaagaagcactccggcccccaacctcc 32186247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 12308757 - 12308659
Alignment:
Q  107 accaacgccgtccttaatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||| |||||| ||||  | || ||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||    
T  12308757 accaacaccgtccctaattttcgcaacctccctccaccaataagaaccactccggcccccaacctccatgcctcctcaccataccttgcagccaacacc 12308659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 121 - 205
Target Start/End: Complemental strand, 23054592 - 23054508
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||| |||||||||  ||||| |||||||||    
T  23054592 taatcctagccacctctctccacctataagaaacactccggcccccaacctccctgcctcctcaccatgtctagccgccaacacc 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 11341359 - 11341399
Alignment:
Q  165 ccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  11341359 ccaacctccctgcctcctcaccatacctagcagccaacacc 11341399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 8753035 - 8752949
Alignment:
Q  103 cctcaccaacgccgtccttaatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccata 189  Q
    ||||||| || |||||| ||||| | || | ||||||||||||| ||||  ||||| ||||||||||||||| ||| ||||||||||    
T  8753035 cctcacctaccccgtccctaatcttcgcaatctccctccaccaacaagagacactccggcccccaacctcccagcctcctcaccata 8752949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 39658996 - 39658939
Alignment:
Q  134 ctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacc 191  Q
    ||||||||||||| |||||||||||   ||||||||||||| ||| ||||||||||||    
T  39658996 ctccctccaccaaaaagaaccactcctacccccaacctcccagcctcctcaccatacc 39658939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 13553812 - 13553760
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||  |||||||||||||||||| ||||| |||| ||||||||||||||    
T  13553812 taatcctccccacctccctccaccaatgagaacaactccggcccccaacctcc 13553760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 34232222 - 34232264
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    ||||||||||||||| |||||| |||| |||||||||||||||    
T  34232222 acctccctccaccaagaagaacaactccggcccccaacctccc 34232264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 4077796 - 4077840
Alignment:
Q  130 ccacctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    |||||||||||||||||  ||||| |||| |||||||||||||||    
T  4077796 ccacctccctccaccaagtagaacaactccggcccccaacctccc 4077840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 20349374 - 20349402
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagta 46  Q
    |||||||||||||||||||||||||||||    
T  20349374 ctaaccacctatcataccaaaagaaagta 20349402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 28173604 - 28173572
Alignment:
Q  121 taatcctagccacctccctccaccaataagaac 153  Q
    |||||||||||| ||||||||||||||||||||    
T  28173604 taatcctagccatctccctccaccaataagaac 28173572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 205
Target Start/End: Original strand, 23923415 - 23923489
Alignment:
Q  131 cacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||| ||||||| ||||||||||| | ||||||||||| ||||| ||||||||||||||||||||||||||    
T  23923415 cacctcccgccaccaaaaagaaccactcagacccccaacctctctgcctcctcaccatacctagcagccaacacc 23923489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 7000415 - 7000355
Alignment:
Q  114 ccgtccttaatcctagccacctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    |||||| |||||||  | ||||||||||||||| |||||| ||||||||||||||||||||    
T  7000415 ccgtccctaatcctccctacctccctccaccaagaagaacaactctggcccccaacctccc 7000355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29572580 - 29572523
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatcacccgcctttcgcgacac 75  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| |||| || |||||    
T  29572580 ctaaccacctatcaaaccaaaagaaagtgtcagccccatctcccaccttacgggacac 29572523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29573957 - 29573900
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatcacccgcctttcgcgacac 75  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| |||| || |||||    
T  29573957 ctaaccacctatcaaaccaaaagaaagtgtcagccccatctcccaccttacgggacac 29573900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29575334 - 29575277
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatcacccgcctttcgcgacac 75  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| |||| || |||||    
T  29575334 ctaaccacctatcaaaccaaaagaaagtgtcagccccatctcccaccttacgggacac 29575277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29576711 - 29576654
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatcacccgcctttcgcgacac 75  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| |||| || |||||    
T  29576711 ctaaccacctatcaaaccaaaagaaagtgtcagccccatctcccaccttacgggacac 29576654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29578088 - 29578031
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatcacccgcctttcgcgacac 75  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| |||| || |||||    
T  29578088 ctaaccacctatcaaaccaaaagaaagtgtcagccccatctcccaccttacgggacac 29578031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 29579465 - 29579408
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatcacccgcctttcgcgacac 75  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| |||| || |||||    
T  29579465 ctaaccacctatcaaaccaaaagaaagtgtcagccccatctcccaccttacgggacac 29579408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 15862305 - 15862253
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||||||||||||||||||||||| |||| ||||   ||||||||||||    
T  15862305 taatcctagccacctccctccaccaatacgaacaactccatcccccaacctcc 15862253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 29572449 - 29572409
Alignment:
Q  165 ccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  29572449 ccaacctctctgcctcctcaccatacctagcagccaacacc 29572409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 29573826 - 29573786
Alignment:
Q  165 ccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  29573826 ccaacctctctgcctcctcaccatacctagcagccaacacc 29573786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 29575203 - 29575163
Alignment:
Q  165 ccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  29575203 ccaacctctctgcctcctcaccatacctagcagccaacacc 29575163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 29576580 - 29576540
Alignment:
Q  165 ccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  29576580 ccaacctctctgcctcctcaccatacctagcagccaacacc 29576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 29577957 - 29577917
Alignment:
Q  165 ccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  29577957 ccaacctctctgcctcctcaccatacctagcagccaacacc 29577917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 29579334 - 29579294
Alignment:
Q  165 ccaacctccctgccacctcaccatacctagcagccaacacc 205  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  29579334 ccaacctctctgcctcctcaccatacctagcagccaacacc 29579294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 588036 - 588079
Alignment:
Q  131 cacctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||    
T  588036 cacctccttccaccaacaagaaccactctggcgcccaacctccc 588079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 18896061 - 18896150
Alignment:
Q  114 ccgtccttaatcctagccacctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccatacctagcagccaaca 203  Q
    |||||||||||| | || || |||||||||||| |||||  |||  |||| ||||||||||  ||||||||| |||||| || |||||||    
T  18896061 ccgtccttaatcttcgctacttccctccaccaagaagaaatacttcggcctccaacctcccatccacctcacgatacctcgctgccaaca 18896150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 31864308 - 31864361
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    |||||||  ||||||||| ||||||| ||||||||||||| || ||||||||||    
T  31864308 taatcctccccacctcccgccaccaagaagaaccactctgaccgccaacctccc 31864361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 36157666 - 36157718
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||| |||||||||||||||||| |||||| |||| ||||||||||||||    
T  36157666 taatcctcgccacctccctccaccaagaagaacaactccggcccccaacctcc 36157718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 15439654 - 15439705
Alignment:
Q  139 tccaccaataagaaccactctggcccccaacctccctgccacctcaccatac 190  Q
    |||||||| ||||||| ||| ||||||||||||||||||| |||||||||||    
T  15439654 tccaccaaaaagaaccgctccggcccccaacctccctgcctcctcaccatac 15439705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 15530958 - 15531009
Alignment:
Q  139 tccaccaataagaaccactctggcccccaacctccctgccacctcaccatac 190  Q
    |||||||| ||||||| ||| ||||||||||||||||||| |||||||||||    
T  15530958 tccaccaaaaagaaccgctccggcccccaacctccctgcctcctcaccatac 15531009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 28992849 - 28992807
Alignment:
Q  129 gccacctccctccaccaataagaaccactctggcccccaacct 171  Q
    |||||||||||||||||  ||||| ||||||||||||||||||    
T  28992849 gccacctccctccaccacgaagaaacactctggcccccaacct 28992807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 4987697 - 4987648
Alignment:
Q  117 tccttaatcctagccacctccctccaccaataagaaccactctggccccc 166  Q
    |||||||||||  ||||||||| ||||||| |||||| ||||||||||||    
T  4987697 tccttaatcctccccacctcccgccaccaagaagaacaactctggccccc 4987648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 12332386 - 12332435
Alignment:
Q  140 ccaccaataagaaccactctggcccccaacctccctgccacctcaccata 189  Q
    ||||||| ||||||||||| |||||||||||||||  || ||||||||||    
T  12332386 ccaccaagaagaaccactccggcccccaacctcccatcctcctcaccata 12332435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 17659354 - 17659395
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| |||||| |||| ||||||||||||||    
T  17659354 acctccctccaccaagaagaacaactccggcccccaacctcc 17659395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 4310470 - 4310418
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||| | |||||| |||||||| ||||||||||| |||||||| |||||    
T  4310470 taatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctcc 4310418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 9668634 - 9668582
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||  |||||||||||||||||||||||| |||| ||||||||||||||    
T  9668634 taatcctccccacctccctccaccaataagaacaactccggcccccaacctcc 9668582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 43722637 - 43722587
Alignment:
Q  138 ctccaccaataagaaccactctggcccccaacctccctgccacctcaccat 188  Q
    ||||||||| |||||||||||||||||||||||||||  || |||||||||    
T  43722637 ctccaccaagaagaaccactctggcccccaacctcccaccctcctcaccat 43722587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 25381015 - 25380962
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    |||||||  ||||||||||||||||  |||||| ||||||||||||||||||||    
T  25381015 taatcctccccacctccctccaccacgaagaacaactctggcccccaacctccc 25380962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 11028382 - 11028434
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||| |||||||| ||||||||| |||||| ||||||||||||| |||||    
T  11028382 taatcctcgccacctctctccaccaagaagaacaactctggcccccatcctcc 11028434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 11234096 - 11234055
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||| ||||||||||||| |||| ||||||||||||||    
T  11234096 acctcccttcaccaataagaacaactccggcccccaacctcc 11234055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 20796180 - 20796232
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||  |||||||||||||||||||||||| |||| ||||||||||||||    
T  20796180 taatcctccccacctccctccaccaataagaacaactccggcccccaacctcc 20796232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 39430789 - 39430841
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||  |||||||||||||||||||||||| |||| ||||||||||||||    
T  39430789 taatcctccccacctccctccaccaataagaacaactccggcccccaacctcc 39430841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 49264592 - 49264540
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||  |||||||||||||||||||||||| |||| ||||||||||||||    
T  49264592 taatcctccccacctccctccaccaataagaacaactccggcccccaacctcc 49264540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 27393525 - 27393485
Alignment:
Q  166 caacctccctgccacctcaccatacctagcagccaacacca 206  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  27393525 caacctccctgcctcctcaccatacctagcaaccaacacca 27393485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 25504611 - 25504570
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||| ||||||| |||||| |||||||||||||||||||    
T  25504611 acctcccgccaccaagaagaacaactctggcccccaacctcc 25504570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 37530976 - 37531016
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtatcagccccatca 58  Q
    |||||||||||||| |||||||  |||||||||||||||||    
T  37530976 ctaaccacctatcagaccaaaacgaagtatcagccccatca 37531016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 10562950 - 10562909
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  10562950 acctccctccaccaagaagaacaactctggcccccaacctcc 10562909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 53780568 - 53780610
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    ||||||||||||||| |||||| |||||| |||||||||||||    
T  53780568 acctccctccaccaagaagaacaactctgacccccaacctccc 53780610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 19114959 - 19115000
Alignment:
Q  132 acctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    ||||||| ||||||| |||||| |||||||||||||||||||    
T  19114959 acctcccgccaccaagaagaacaactctggcccccaacctcc 19115000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 19648221 - 19648274
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctccc 174  Q
    |||||||  ||||||||| ||||||| |||||| |||| |||||||||||||||    
T  19648221 taatcctccccacctcccgccaccaagaagaacaactccggcccccaacctccc 19648274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 48497782 - 48497753
Alignment:
Q  18 ctaaccacctatcataccaaaagaaagtat 47  Q
    ||||||||||||||||||||||||||||||    
T  48497782 ctaaccacctatcataccaaaagaaagtat 48497753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 40688578 - 40688630
Alignment:
Q  121 taatcctagccacctccctccaccaataagaaccactctggcccccaacctcc 173  Q
    |||||||| | |||||| |||||||| ||||||||||| |||||||| |||||    
T  40688578 taatcctaccaacctccttccaccaaaaagaaccactccggcccccatcctcc 40688630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 63907 - 63852
Alignment:
Q  134 ctccctccaccaataagaaccactctggcccccaacctccctgccacctcaccata 189  Q
    |||||||||||||  |||| |||||| |||||||||||||||||| ||||| ||||    
T  63907 ctccctccaccaagtagaaacactctagcccccaacctccctgcctcctcatcata 63852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University