View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9937_low_33 (Length: 212)
Name: NF9937_low_33
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 12540255 - 12540451
Alignment:
| Q |
1 |
aaaccgatagcaccgaccacctcaaatcagacttgaaattcatcaaccgaatccttaacattcacacttcttcttaacgaaacaacgacgttattaggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12540255 |
aaaccgatagcaccgaccacctcaaatcagacttgaaattcatcaaccgaatccatagcattcacacttcttcttaacgaaacaacgacgttattaggat |
12540354 |
T |
|
| Q |
101 |
aaattcagaaaacacatgcaatactcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgacgatcaaagataacaaattattat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12540355 |
aaattcagaaaacacatgcaatactcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattat |
12540451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 28384938 - 28385100
Alignment:
| Q |
35 |
gaaattcatcaaccgaatccttaacattcacacttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactcctttaatt |
134 |
Q |
| |
|
|||||||||| ||| ||| | ||||||| | |||| | ||| |||||||||||||||||||||||||| |||| ||||| ||| | ||| || ||| ||| |
|
|
| T |
28384938 |
gaaattcatcgaccaaatacataacattaatacttgtgcttgacgaaacaacgacgttattaggataagttcaaaaaactcataccatattcatttgatt |
28385037 |
T |
|
| Q |
135 |
aatcatgtggcttgcagtctctaaatcttttaatttcgacgatcaaagataacaaattattat |
197 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||| |||| |||| |||| |||||||||||||| |
|
|
| T |
28385038 |
aatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattat |
28385100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 194
Target Start/End: Complemental strand, 3418012 - 3417943
Alignment:
| Q |
125 |
tcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgacgatcaaagataacaaattat |
194 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || |||||| |||| ||||||||| ||||||||||| |
|
|
| T |
3418012 |
tcctttaattaatcaagtggcttgcagtctctcaactttttaagttcgtcgatcaaagttaacaaattat |
3417943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 13439829 - 13439966
Alignment:
| Q |
61 |
ttcacacttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactccttt-aattaatcatgtggcttgcagtctctaaa |
159 |
Q |
| |
|
||||||||||| ||| ||||| |||| | ||||||||||| || | |||||| | ||||| |||||| |||||||||||| ||||| |||||| || |
|
|
| T |
13439829 |
ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa |
13439928 |
T |
|
| Q |
160 |
tcttttaatttcgacgatcaaagataacaaattattat |
197 |
Q |
| |
|
|||||||| ||| | || |||| ||||||||||||| |
|
|
| T |
13439929 |
tcttttaagttcttcaattaaagccaacaaattattat |
13439966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University