View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_5 (Length: 476)
Name: NF9937_low_5
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Complemental strand, 5867058 - 5866616
Alignment:
| Q |
15 |
taggtagtttgtgaagttggcaatccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaag |
114 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5867058 |
taggtagtttgtgaagttggcaacccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcatgaaaccaatcattttgacaacgactaag |
5866959 |
T |
|
| Q |
115 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattca |
214 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5866958 |
aacaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgtcactcaaatcaagtgattca |
5866859 |
T |
|
| Q |
215 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcatagtacttagaaaatcag |
314 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5866858 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcgtagtacttagaaaatcag |
5866759 |
T |
|
| Q |
315 |
gcactgtggattgcatgaaatcattgccactaaggttcaaataacttaaatatggcaattgtagcaaagatgaatttaaatgaccctgaagtttatctaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5866758 |
gcactgtggattgcatgaaatcattgccactaaggttcaaataacttaaatatggcaattgtagcaaagatgaatttaaatgaccctgaagtttatctaa |
5866659 |
T |
|
| Q |
415 |
ggaattagaacaatgaagattcaaagaaataacatgacctgtg |
457 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5866658 |
ggaattagaacaatgaagattcaaagaaataacatgacctgtg |
5866616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 416 - 457
Target Start/End: Complemental strand, 5865203 - 5865162
Alignment:
| Q |
416 |
gaattagaacaatgaagattcaaagaaataacatgacctgtg |
457 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5865203 |
gaattagaacaatgaagattcaaagaaataacatgacctgtg |
5865162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 36978013 - 36978455
Alignment:
| Q |
15 |
taggtagtttgtgaagttggcaatccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaag |
114 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
36978013 |
taggtagtttgtgaagttggcaacccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcatgaaaccaatcattttgacaacgactaag |
36978112 |
T |
|
| Q |
115 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
36978113 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatgaagtgattca |
36978212 |
T |
|
| Q |
215 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcatagtacttagaaaatcag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36978213 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcatagtacttagaaaatcag |
36978312 |
T |
|
| Q |
315 |
gcactgtggattgcatgaaatcattgccactaaggttcaaataacttaaatatggcaattgtagcaaagatgaatttaaatgaccctgaagtttatctaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
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|
| T |
36978313 |
gcactgtggattgcatgaaatcattgccactaaggttcaaataacttaaatatggcaatttgagcaaagatgaacttaactgaccctgaagtttatctaa |
36978412 |
T |
|
| Q |
415 |
ggaattagaacaatgaagattcaaagaaataacatgacctgtg |
457 |
Q |
| |
|
|||||||||||||| ||||| | || ||||||||||||||| |
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|
| T |
36978413 |
ggaattagaacaatagagattaagggagataacatgacctgtg |
36978455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 457
Target Start/End: Original strand, 36966271 - 36966713
Alignment:
| Q |
15 |
taggtagtttgtgaagttggcaatccgataaacgcaatgtatcaagagaatgaagtatcactctgatgtcgtgaaaccaatcattttgacaacgactaag |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||| || || |||||||||||||||| ||||| |||||| |
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|
| T |
36966271 |
taggtagtttgtgaagttggcaacccgataaacgcaatgtttcaagagaatgaagtattgctcttatatcatgaaaccaatcattttcacaactactaag |
36966370 |
T |
|
| Q |
115 |
atcaacaccacttaaatcaagaattttcaaggaagaaagtccatgaagccattttagattattgacatagaaactattgccactcaaatcaagtgattca |
214 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
36966371 |
atcaacaccacttaaatcgagaattttcatggaagaaagtccttgaagccattttagattattgacatagaaagcattgccactcaaatcaagtgattca |
36966470 |
T |
|
| Q |
215 |
agtagagaaaggtttccaagattatctaagaggttccccttaaaattggcatgagataggtcaagatgttttaaatttttcatagtacttagaaaatcag |
314 |
Q |
| |
|
|||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||| |
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|
| T |
36966471 |
agtagagacaggtttacaagattatcagagaggttgcccttaaaattggcatgagataggtcaagatgttttaaattttgcatattaccaagaaagtcag |
36966570 |
T |
|
| Q |
315 |
gcactgtggattgcatgaaatcattgccactaaggttcaaataacttaaatatggcaattgtagcaaagatgaatttaaatgaccctgaagtttatctaa |
414 |
Q |
| |
|
||||| | ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||| |
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|
| T |
36966571 |
gcactctagattgcatgaaatcattgccagttaggttcaaataacttaaatatggcaattgtagcaatgctgaacttacatgaccctgaagtttatctaa |
36966670 |
T |
|
| Q |
415 |
ggaattagaacaatgaagattcaaagaaataacatgacctgtg |
457 |
Q |
| |
|
||||||||| |||| |||| | |||||||||||||||||| |
|
|
| T |
36966671 |
ggaattagagcaatagagatcaagggaaataacatgacctgtg |
36966713 |
T |
|
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