View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9937_low_6 (Length: 474)
Name: NF9937_low_6
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9937_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 26034576 - 26034462
Alignment:
| Q |
1 |
gacatgcctcaacttgtggtactaatatagtacattactttacctacaagaaaaacaaatcaacaaaaacaggaaacatgtatactattaatagaccttg |
100 |
Q |
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| T |
26034576 |
gacatgcctcaacttgtggtactaatatagtacattactttacctacaagaaaaacaaatcaacaaaaacaggaaacaggtatactattaatagaacttg |
26034477 |
T |
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| Q |
101 |
tttccactttcttca |
115 |
Q |
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| T |
26034476 |
tttccactttcttca |
26034462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 26033804 - 26033725
Alignment:
| Q |
197 |
tactcacgtcacatggtcccacactaaattacacacttatttcacgttaagaaaaa-attgagtagtgttatactaaaattt |
277 |
Q |
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| T |
26033804 |
tactcacgtcacatggtcccacactaaat--gacacttatttcacgttaagaaaaagattgagtagtgttatactaaaattt |
26033725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 336 - 455
Target Start/End: Complemental strand, 26033202 - 26033081
Alignment:
| Q |
336 |
tagatcatttataacaatagatgtgactatgaggaaaaa-caactaatnnnnnnntaataatgatgatagtta-cattatgcatcaacgaactgtgagga |
433 |
Q |
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| T |
26033202 |
tagatcatttataactatcgatgtgattatgaggaaaaaacaactgatgaaaagataataattatgataatttgcattatgcatcaacaaactgtgagga |
26033103 |
T |
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| Q |
434 |
gattgagtttcatagcaattga |
455 |
Q |
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| T |
26033102 |
gattgagtttcatagcaattga |
26033081 |
T |
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