View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9937_low_7 (Length: 471)

Name: NF9937_low_7
Description: NF9937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9937_low_7
NF9937_low_7
[»] chr4 (2 HSPs)
chr4 (271-455)||(14207861-14208045)
chr4 (13-195)||(14207603-14207785)
[»] chr2 (2 HSPs)
chr2 (271-455)||(31408079-31408263)
chr2 (13-195)||(31407821-31408003)
[»] chr3 (1 HSPs)
chr3 (46-190)||(14956578-14956721)
[»] chr8 (1 HSPs)
chr8 (105-194)||(36243538-36243626)
[»] chr6 (2 HSPs)
chr6 (148-194)||(13154397-13154443)
chr6 (148-194)||(13159253-13159299)
[»] scaffold0076 (1 HSPs)
scaffold0076 (39-99)||(9212-9272)
[»] chr5 (1 HSPs)
chr5 (39-99)||(19697304-19697364)
[»] chr1 (1 HSPs)
chr1 (39-99)||(45222417-45222477)


Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 271 - 455
Target Start/End: Original strand, 14207861 - 14208045
Alignment:
Q  271 caactcactccatattaggactcgagcatctgtaagcaatcaccaccgcaaaaaccgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14207861 caactcactccatattaggactcgagcatctgtaagcaatcaccaccgcaaaaaccgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 14207960  T
Q  371 taatgatagtctttggctgcgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaac 455  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14207961 taatgatagtctttggctacgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaac 14208045  T

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Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 14207603 - 14207785
Alignment:
Q  13 gttgcatagtctgttgtcagtatgaggaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaatttaaattcctatatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14207603 gttgcatagtctgttgtcagtatgaggaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaatttaaattcctatatc 14207702  T
Q  113 taaattctaaaacacacggttgtaacnnnnnnnggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 195  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14207703 taaattctaaaacacacggttgtaacaaaaaaaggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 14207785  T

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Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 271 - 455
Target Start/End: Original strand, 31408079 - 31408263
Alignment:
Q  271 caactcactccatattaggactcgagcatctgtaagcaatcaccaccgcaaaaaccgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 370  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31408079 caactcactccatattaggactagagcatctgtaagcaatcaccaccgcaaaaaccgtcaccgcaggctgctagagtcaaaattcccaatttgaaatcaa 31408178  T
Q  371 taatgatagtctttggctgcgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaac 455  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31408179 taatgatagtctttggctacgttaattcattgtggaaataaaaattattttgaacacaacaatatgaagtttgtgaggtgcaaac 31408263  T

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Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 31407821 - 31408003
Alignment:
Q  13 gttgcatagtctgttgtcagtatgaggaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaatttaaattcctatatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31407821 gttgcatagtctgttgtcagtatgaggaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaatttaaattcctatatc 31407920  T
Q  113 taaattctaaaacacacggttgtaacnnnnnnnggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 195  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31407921 taaattctaaaacacacggttgtaacaaaaaaaggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatgc 31408003  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 14956578 - 14956721
Alignment:
Q  46 ttactaaaacacatattttggcattgaagaatgtaacaggaatagagacaatttaaattcctatatctaaattctaaaacacacggttgtaacnnnnnnn 145  Q
    ||||||||||||| || | |||||| |||||||||| ||||  |||||| |||| ||  |||| ||||||||||||||||||||  |||||||           
T  14956578 ttactaaaacacacatgtaggcattcaagaatgtaataggatcagagacgatttgaag-cctaaatctaaattctaaaacacacatttgtaacgcaaaaa 14956676  T
Q  146 ggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaa 190  Q
    || |||||||||||||||||||| |||| ||| ||||||||||||    
T  14956677 gggcatgagtgttgaaagtgaaaatcaatgagacattcaatcaaa 14956721  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 36243538 - 36243626
Alignment:
Q  105 cctatatctaaattctaaaacacacggttgtaacnnnnnnnggacatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatg 194  Q
    |||| ||||||||||||||||||||  |||||||       || |||||||||||||||||||| |||| ||||||||||||||||||||    
T  36243538 cctaaatctaaattctaaaacacacatttgtaacacgaaaagggcatgagtgttgaaagtgaaa-tcaatgaggcattcaatcaaacatg 36243626  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 13154397 - 13154443
Alignment:
Q  148 acatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatg 194  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  13154397 acatgagcgttgaaagtgaaatccaatgaggcattcaatcaaacatg 13154443  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 13159253 - 13159299
Alignment:
Q  148 acatgagtgttgaaagtgaaattcaaagaggcattcaatcaaacatg 194  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  13159253 acatgagcgttgaaagtgaaatccaatgaggcattcaatcaaacatg 13159299  T

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Target: scaffold0076 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 9272 - 9212
Alignment:
Q  39 gaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaattt 99  Q
    ||||| |||||| ||||||| |||| |||||||||||||| || |||| | ||||||||||    
T  9272 gaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaattt 9212  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 19697364 - 19697304
Alignment:
Q  39 gaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaattt 99  Q
    ||||| |||||  |||||||||||| ||||| ||||||||||||| || | ||||||||||    
T  19697364 gaaacaattacctaaacacatatttaggcatcgaagaatgtaacaagagtggagacaattt 19697304  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 45222417 - 45222477
Alignment:
Q  39 gaaaccattactaaaacacatattttggcattgaagaatgtaacaggaatagagacaattt 99  Q
    ||||| |||||| ||||||| |||| |||||||||||||| || |||| | ||||||||||    
T  45222417 gaaacaattacttaaacacacatttaggcattgaagaatgcaaaaggagttgagacaattt 45222477  T

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