View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_high_10 (Length: 223)
Name: NF9938_high_10
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 34860109 - 34860316
Alignment:
| Q |
1 |
acaaaattcaaatattaattgaatttgtcaagcctgtttttggattcaatacctcttgcatatcaatttcaggaggcttattaaaaaggcaagtatataa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860109 |
acaatattcaaatattaattgaatttgtcaagcctgtttttggattcaatacctcttgcatatcaatttcaggaggcttattaaaaaggcaagtatataa |
34860208 |
T |
|
| Q |
101 |
gtacatgtacactttctgtgatattgcttaagaaaactaaaagtggcttagtaacattgatttgttgaagaatgagaaagccaaattccagttgataatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34860209 |
gtacatgtacactttctgtgatattgcttaagaaaactaaaagtggcttagtaacattgatttgttgaagaatgagaaagccaaattccagttgataatt |
34860308 |
T |
|
| Q |
201 |
gatatttt |
208 |
Q |
| |
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|||||||| |
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| T |
34860309 |
gatatttt |
34860316 |
T |
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