View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_high_2 (Length: 467)
Name: NF9938_high_2
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 47689143 - 47689553
Alignment:
| Q |
19 |
taatgagaaaatagttgattacatgaaggggttcagcaaagcttattatatccaatgaacacatttagtgttacaaaaagatgacctattatgacataaa |
118 |
Q |
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| T |
47689143 |
taatgagaaaatagttgattacatgaaggggttcagcaaagcttattatatccaatgaacacatttagtgttacaaaaagatgacctattatgacataaa |
47689242 |
T |
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| Q |
119 |
tacacatcatctttaatgttttaaacttgaaccatttcatatgctttttcattatgtacaatagtgaaactatataaataatatttatacaataattggg |
218 |
Q |
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| T |
47689243 |
tacacatcatctttaatgttttaaacttgaaccatttcatatgctttttcattatgtacaatagggaaactatataaataatatttatacaataattggg |
47689342 |
T |
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| Q |
219 |
gaggaaaagagttaaaactatgagttcatgtagactacacatattgtgctataatatcaactaaaataacaaaatatttgtgaaaacacatatccaggcc |
318 |
Q |
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| T |
47689343 |
gaggaaaagagttaaaactatgagttcatgtagactacacatattgtgctataatatcaactaaaataacaaaatatttgtgaaaacacatatccaggcc |
47689442 |
T |
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| Q |
319 |
aagggaaaaatgaagatgaatctgaagctgaaactggtgatgatcttaaagttggagatttgttgcaatttgactttgaaaccatcagaatagctacaag |
418 |
Q |
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| T |
47689443 |
aagggaaaaatgaagatgaatctgaagctgaaactggtgatgatcttaaagttggagatttgttgcaatttgactttgaaaccatcagaatagctacaag |
47689542 |
T |
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| Q |
419 |
caacttctctg |
429 |
Q |
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| T |
47689543 |
caacttctctg |
47689553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 288 - 429
Target Start/End: Original strand, 47677963 - 47678104
Alignment:
| Q |
288 |
caaaatatttgtgaaaacacatatccaggccaagggaaaaatgaagatgaatctgaagctgaaactggtgatgatcttaaagttggagatttgttgcaat |
387 |
Q |
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|||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||| || |||||||||| |
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| T |
47677963 |
caaaatatttgtaaaaacacatgactaggccaagataaaaatgaagatgaagatgaagctgaagctggtaataatcttaaagttggcgacttgttgcaat |
47678062 |
T |
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| Q |
388 |
ttgactttgaaaccatcagaatagctacaagcaacttctctg |
429 |
Q |
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| T |
47678063 |
ttgactttgcaaccatcagattagctacaagcaacttctctg |
47678104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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