View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_high_5 (Length: 269)
Name: NF9938_high_5
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 740345 - 740094
Alignment:
| Q |
1 |
gtaaatgtgatgtactccaatgtaaattaagttttatctcttatatatgataactcactcgcataactttttggctcctctctctaccaactaccttcac |
100 |
Q |
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| T |
740345 |
gtaaatgtgatgtactccaatgtaaattaagttttatctcttatatatgataactcactcgcataactttttggctcctctctctaccaactaccatcac |
740246 |
T |
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| Q |
101 |
taattcattttattttaaaactctcctcctcatt-ttttaatttatatttatgtccacaccatacaattgaataaatcaaaaagaccagcttgaccatat |
199 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
740245 |
taattcattttattttaaaactctactcctcatttttttaatttatatttatgtccacaccatacaattgagtaaataaaaaagaccagcttgaccatat |
740146 |
T |
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| Q |
200 |
atgcagttacgatctagattttttaatttgagaggaaggtagcattccaaaa |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
740145 |
atgcagttacgatctagattttttaatttgagaggaaggtagcattccaaaa |
740094 |
T |
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