View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_high_6 (Length: 259)
Name: NF9938_high_6
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 47590289 - 47590524
Alignment:
| Q |
17 |
cagttgttacatcagatatgatgtgtaccctttctatcgccccagtaatgctccaacaccacaagaactcgttccagcttccaatacaatcgattcaaaa |
116 |
Q |
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| T |
47590289 |
cagttgttacatcagatatgatgtgtaccctttctatcgccccagtaatgctccaacaccacaagaactcgttccagcttccaatacaatcgattcaaaa |
47590388 |
T |
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| Q |
117 |
tactcacaacatccggcttatctttcccacaactgttcaatcaatgaaccaatgaacaatgattttctatcaaatctcaaaacactcttcacttctttgt |
216 |
Q |
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| T |
47590389 |
tactcacaacatcctgcttatctttcccacaactgttcaatcaatgaacccgtgaacaatgattttctatcaaatctcaaaacattcttcacttctttgt |
47590488 |
T |
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| Q |
217 |
cttccaatgccatcag-accagtttcttaaacacga |
251 |
Q |
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| T |
47590489 |
cttccaatgccatcagaaccagtttcttaaagacga |
47590524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 30437610 - 30437693
Alignment:
| Q |
108 |
gattcaaaatactcacaacatccggcttatctttcccacaactgttcaatcaatgaaccaatgaacaatgattttctatcaaat |
191 |
Q |
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| T |
30437610 |
gattcaaaatacccgcaacatcctgcttatctttcctgcaaatgttcaagcaatgaaactttgaacaataatttcctatcaaat |
30437693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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