View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_low_1 (Length: 548)
Name: NF9938_low_1
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 28154460 - 28154879
Alignment:
| Q |
19 |
actacaatatggtttgtttccacacaagaccaaaataggagcgcacgatctcatgcaatcttcaaatcaataatcaatactcgataggtaggacttagga |
118 |
Q |
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| T |
28154460 |
actacaatatggtttgtttccacacaagaccaaaataggagcgcacgatctcatgcaatcttcaaatcaataatcaatactcgataggtag--------- |
28154550 |
T |
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| Q |
119 |
gtaggacccttgttttgtgctttgtctataactctatggtcagctcaaaacagctacaaaaaacatgtcctattcataccacatctattttgttttcaaa |
218 |
Q |
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| T |
28154551 |
----gacccttgttttgtgctttgtctataactctatggtcagcccaagacagctacaaaaaacatgtcctcttcataccacatctattttgttttcaaa |
28154646 |
T |
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| Q |
219 |
gtttctaatctaaatatgttaattaatttcagaccaaacaaaatcaacaatgtctgcagataccctactacataataattgatgnnnnnnnngagttgct |
318 |
Q |
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| T |
28154647 |
gtttctaatctaaatatgttaattaatttcagaccaaacaaaatcaacaatatctgcagataccctactacataataattgatg-aaaaaaagtgttgct |
28154745 |
T |
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| Q |
319 |
catttttactaaatgaaaaaatggcaaaagaaattcaaatgacagctagcaagagtcaatggtgactgatacacgagctcaactacatggttaattaatt |
418 |
Q |
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| T |
28154746 |
catttttactaaatgaaaaaatggcaaaagaaattcaaatgacagctagcaagagtcaatggtgactgatacacgagctcaactacatggttaattaatt |
28154845 |
T |
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| Q |
419 |
gaaacacgtggcaggtgttgttcttgtagcagta |
452 |
Q |
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| T |
28154846 |
gaaacacgtggcaggtgttgttcttgtagtagta |
28154879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 476 - 537
Target Start/End: Original strand, 28154888 - 28154949
Alignment:
| Q |
476 |
cctcaccacaactttaannnnnnngtgaaatgccatttatatcactcttctcttttgccttt |
537 |
Q |
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| T |
28154888 |
cctcaccacaactttaatttttttgtgaaatgccatttatatcactcttctcttttgccttt |
28154949 |
T |
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