View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_low_11 (Length: 250)
Name: NF9938_low_11
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 3093953 - 3094197
Alignment:
| Q |
1 |
gagagcctggaccaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacaccgatccaa |
100 |
Q |
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| T |
3093953 |
gagagcctggaccaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacaccgatccaa |
3094052 |
T |
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| Q |
101 |
atgagaaccctttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaa |
200 |
Q |
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| T |
3094053 |
atgagaaccctttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaa |
3094152 |
T |
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| Q |
201 |
ggcattttctccatttaaatacacaaacatgtcagtttctatgct |
245 |
Q |
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| T |
3094153 |
ggcattttctccatttaaatacacaaacatgtcagtttctatgct |
3094197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 3085110 - 3085349
Alignment:
| Q |
4 |
agcctggaccaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacaccgatccaaatg |
103 |
Q |
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| T |
3085110 |
agcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccgaaacactgatccaaatg |
3085209 |
T |
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| Q |
104 |
agaaccctttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaaggc |
203 |
Q |
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| T |
3085210 |
ataaccctttggtaacatttaactacttccaggacccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaataatagattcaaatgc |
3085309 |
T |
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| Q |
204 |
attttctccatttaaatacacaaacatgtcagtttctatg |
243 |
Q |
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| T |
3085310 |
ttttgctccatttagatacaataacatatcattttctatg |
3085349 |
T |
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