View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_low_16 (Length: 237)
Name: NF9938_low_16
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 3093934 - 3093712
Alignment:
| Q |
1 |
tgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataacatcaatatt |
100 |
Q |
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| T |
3093934 |
tgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataacatcaatatt |
3093835 |
T |
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| Q |
101 |
tatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctgatgaccatgatcggatgctccataaaaatacagatt |
200 |
Q |
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| T |
3093834 |
tatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctgatgaccatgatcggatgctccataaaaatacagatt |
3093735 |
T |
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| Q |
201 |
tttattttaccaatagaaaatat |
223 |
Q |
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||||||||||| ||||||||||| |
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| T |
3093734 |
tttattttaccgatagaaaatat |
3093712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3085088 - 3084999
Alignment:
| Q |
1 |
tgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaattaaaaataa |
90 |
Q |
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||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3085088 |
tgctatggcttgtagaatcatttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagtaaattaaaaataa |
3084999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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