View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_low_3 (Length: 463)
Name: NF9938_low_3
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Original strand, 50249942 - 50250394
Alignment:
| Q |
17 |
acaaaactgtcgatatctgtaattctgctaattcttatctagtagtgtgtgtgt------tgtttttgttagctttattcattgaatagtatcaagactt |
110 |
Q |
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| T |
50249942 |
acaaaactgtcgatatctgtaattctgctaattcttatctagtagtgtgtgtgtgtgtattgttttggttagctttattcattgaatagtatcaagactt |
50250041 |
T |
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| Q |
111 |
ccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatattagcatacaaatgctacccaagagttcataatatcaagaaaacgg |
210 |
Q |
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| T |
50250042 |
ccagttttgttaaattattccacagctcatgttacaaatgcagtcaaacacatattagcatacaaatgctacccaagagttcataatatcaagaaaacgg |
50250141 |
T |
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| Q |
211 |
tgaaggataatatttcaaaatcaaaacctcattctttaagttcttaaacttgatcattgtcagggagtgaaagcaaagactctttatacatgaccgcttg |
310 |
Q |
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| T |
50250142 |
tgaaggataatatttcaaaatcaaaacctcattcttcaagttcttaaacttgatcattgtcagggagtgaaagcaaagactctatatacatgaccgcttg |
50250241 |
T |
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| Q |
311 |
gtatggcccgtcccagtttccatgaaacccgaactgctgtccttggtcattgtatttgaccaatgaatgaaaaccattttttccaatgatatcattattt |
410 |
Q |
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| T |
50250242 |
gtatggcccgtcccagttgccatgaaacccgaactgctgtccttggtcattgtatttgaccaatgaatgaaaaccattttttccaatgatatcattattt |
50250341 |
T |
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| Q |
411 |
tttgtagtgtatatagggtaaaagtaaccaggaggaagaacaagtgtcttagt |
463 |
Q |
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| T |
50250342 |
tttgtagtgtatatagggtaaaagtaaccaggaggaagaacaagtgtcttagt |
50250394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 50667081 - 50667041
Alignment:
| Q |
139 |
atgttacaaatgcagtcaaacacatattagcatacaaatgc |
179 |
Q |
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| T |
50667081 |
atgttataaatgcagtcaaacacatattatcctacaaatgc |
50667041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 21979212 - 21979282
Alignment:
| Q |
391 |
ttccaatgatatcattattttttgtagtgtatatagggtaaaagtaaccaggaggaagaacaagtgtctta |
461 |
Q |
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| T |
21979212 |
ttccaatgatatcataattttttgtagagtatacagggaaaatgtcacaacgaggaagaacaagtttctta |
21979282 |
T |
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