View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9938_low_5 (Length: 433)
Name: NF9938_low_5
Description: NF9938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9938_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 167 - 416
Target Start/End: Original strand, 2747036 - 2747286
Alignment:
| Q |
167 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataat-g |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2747036 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataattg |
2747135 |
T |
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| Q |
266 |
tgacttctattgttccaagtctttgtatcataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2747136 |
tgacttctattgttccaagtctttgtatcataccattgatattaagcaacataaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
2747235 |
T |
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| Q |
366 |
aaatggtgaattagtgacaagagagaatcaacaacaatacaatataagttg |
416 |
Q |
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| T |
2747236 |
aaatggtgagttagtgacaagagagaatcaacaacattacaatataagttg |
2747286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 294 - 385
Target Start/End: Original strand, 2755223 - 2755314
Alignment:
| Q |
294 |
cataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattagtgacaa |
385 |
Q |
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| T |
2755223 |
cataccattgacattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaataaaatggtgaattaatgacaa |
2755314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 2754835 - 2754946
Alignment:
| Q |
167 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataat-g |
265 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||| |||||||||||||||||| || ||| |||||| | |
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| T |
2754835 |
acttacaatgacaggaatgaaagcaatccaaaaatatgtgtgccaacctgaaaccatgaacagaaatcttaattttgattg---gaaaattgcataattg |
2754931 |
T |
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| Q |
266 |
tgacttctattgttc |
280 |
Q |
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| T |
2754932 |
tgacttctattgttc |
2754946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 2746934 - 2747017
Alignment:
| Q |
36 |
aaaatttacatttatatgcatgcacata--ttagactagttcaggtcgttcgataaagatctatgacctattctatttaaagca |
117 |
Q |
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| T |
2746934 |
aaaatttacatttatatgcatgcacatagattataatagttcaggtggttcgacaaagatctatgacctattctatttaaagca |
2747017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 294 - 365
Target Start/End: Complemental strand, 55322556 - 55322485
Alignment:
| Q |
294 |
cataccattgatattaagcaacaaaaatatgaccacaaagatccaaagataccaactgcaaccattaaaata |
365 |
Q |
| |
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||||||||||||||| | |||||| || ||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
55322556 |
cataccattgatatttaacaacaagaagatgaccacaaagagccaaagataccaactgcaaccatgaaaata |
55322485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 27383556 - 27383629
Alignment:
| Q |
167 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaataaacataaatcttaatt |
240 |
Q |
| |
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||||||||||||| |||||||||||| |||||| |||||||||||| ||| ||||||| ||| | ||||||||| |
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| T |
27383556 |
acttacaatgacatgaatgaaagcaaaccaaaaatatgtgtgccaatctggaacaatacacaaacatcttaatt |
27383629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 55323230 - 55323178
Alignment:
| Q |
167 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaa |
219 |
Q |
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||||||||| ||||||| |||||||| ||| || ||||| ||||||||||||| |
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| T |
55323230 |
acttacaataacaggaacgaaagcaatccagaaatatgtatgccaacctgaaa |
55323178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 1094745 - 1094688
Alignment:
| Q |
167 |
acttacaatgacaggaatgaaagcaacccaaaagtatgtgtgccaacctgaaacaata |
224 |
Q |
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||||||||||||| ||||||| |||| |||||| |||| ||||||| ||| ||||||| |
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| T |
1094745 |
acttacaatgacatgaatgaatgcaaaccaaaaatatgcgtgccaatctggaacaata |
1094688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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