View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_high_11 (Length: 238)
Name: NF9939_high_11
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 3575841 - 3576045
Alignment:
| Q |
20 |
caagtatcattcatgcaatcagagcttgaatccccaagcagaatttcttctcatcacccttataatgcatcataccaacatcaacaacagcattaccctt |
119 |
Q |
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| T |
3575841 |
caagtatcattcatgcaatcagagcttgaatccccaagcagaatttcttctcatcacccttataatgcatcataccaacatcaacaacagcattatcctt |
3575940 |
T |
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| Q |
120 |
gcaaacaagagttggatcaattgcaatacaatatacacattaataataatgatgctaataatttcctacaacttccacaactagaaaacctcaattctcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3575941 |
gcaaacaagagttggatcaattgcaatacaatatacacattaataataatgatgctaataatttcctacaacttccacaactagaaaacctcaattctcc |
3576040 |
T |
|
| Q |
220 |
tatgc |
224 |
Q |
| |
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||||| |
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| T |
3576041 |
tatgc |
3576045 |
T |
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