View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_high_5 (Length: 336)
Name: NF9939_high_5
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 36320915 - 36321225
Alignment:
| Q |
20 |
aacctcccttaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgcca |
119 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36320915 |
aacctcccctaaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacttacaagccacatgcaacgtaggtgactgcca |
36321014 |
T |
|
| Q |
120 |
ctgtaaaatttatttagaaagaactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattgagattttggtattaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36321015 |
ctgtaaaatttatttagaaagaactattaaaaaacgtttcatgaaaacaataagttatcaaaagttgaatgcaggaacaaattgagattttggtattaat |
36321114 |
T |
|
| Q |
220 |
tacctgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttgataacattgcaacaaa |
319 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36321115 |
tacttgtcggctatgcatttgagggtatcattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttgataacattgcaacaaa |
36321214 |
T |
|
| Q |
320 |
tcttcaccaaa |
330 |
Q |
| |
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||||||||||| |
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| T |
36321215 |
tcttcaccaaa |
36321225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 30 - 321
Target Start/End: Original strand, 36313524 - 36313816
Alignment:
| Q |
30 |
aaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaatt |
129 |
Q |
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||||||||||||||||| ||||||||||||||||||| || |||||||| | | ||| |||||||| ||||| || |||||| |||||||||||||||| |
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| T |
36313524 |
aaccgcggaagctttctcacagcttcactaaatccttcatctgtaatcctcgagcaatctacaagccccatgcgacataggtgtctgccactgtaaaatt |
36313623 |
T |
|
| Q |
130 |
t-atttagaaagaactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattgagattttggtattaattacctgtcg |
228 |
Q |
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| | ||| ||||||||||||||| | ||||||| |||||| ||||||||| | || |||| ||||||| | ||||||||||||||||||||||| | || |
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| T |
36313624 |
tgaattaaaaagaactattaaaagaagtttcataaaaacagtaagatatctacagatgaaagcaggaatacattgagattttggtattaattacttatca |
36313723 |
T |
|
| Q |
229 |
gctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaactccgtttgataacattgcaacaaatc |
321 |
Q |
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||||||||||||||| ||| || |||||||||||||||||||| ||||| || ||||||||| ||||| || |||| ||| ||| || ||||| |
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| T |
36313724 |
gctatgcatttgaggatatcatcggtgcaataatactcaatattaatgtctttaagatgaccacaacttcggttgacaactttgtaaaaaatc |
36313816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 36325901 - 36326050
Alignment:
| Q |
29 |
taaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaat |
128 |
Q |
| |
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|||| ||||||||||||| | ||||||||||||||||||||||| |||||| ||||| |||||||| ||||||| ||||||||||||||||||||||| |
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| T |
36325901 |
taacagcggaagctttctcaaggcttcactaaatcctttatttgtcatcccccaacaatttacaagccgcatgcaaagtaggtgactgccactgtaaaat |
36326000 |
T |
|
| Q |
129 |
ttatttagaaagaactattaaaaaacgtttcatgaaaacaataagatatc |
178 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36326001 |
ttatttaaaaagaactattaaaaaacgttccatgaaaacaataagatatc |
36326050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 36333601 - 36333862
Alignment:
| Q |
36 |
ggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaattt-attt |
134 |
Q |
| |
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||||||||||| | |||| || ||||||||||| ||||||| ||||| |||||||| |||||||||||| |||||||||||| ||||||| | || |
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| T |
36333601 |
ggaagctttctcatggctttaccaaatcctttatctgtaatcaaacaacaatttacaagccgcatgcaacgtagctgactgccactgcaaaatttgaatt |
36333700 |
T |
|
| Q |
135 |
agaaagaactattaaaaaacgtttcatgaaaacaataagatatcaaaagttgaatgcaggaacaaattgagattttggtattaattacctgtcggctatg |
234 |
Q |
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| ||||||||||||| ||| | |||| |||||| ||| |||| | ||||||||||||||| ||||| ||||||||||||||||||| || |||||| |
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| T |
36333701 |
aaaaagaactattaacaaatgcttcaaaaaaacagtaatatatatacagttgaatgcaggaataaattaagattttggtattaattactgatcagctatg |
36333800 |
T |
|
| Q |
235 |
catttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaact |
296 |
Q |
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||||| ||| || || | ||||| || || ||||||||||| |||||||||||| ||||| |
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| T |
36333801 |
catttaaggagatcatcgatgcaaaaacgcttaatatcaatgtcttcaagatgaccacaact |
36333862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 36327772 - 36327888
Alignment:
| Q |
36 |
ggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaatttat-tt |
134 |
Q |
| |
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||||||||||| | |||||| ||||||||| || ||||||| | | ||| |||||||| ||||||| ||||||||||||||||||||||||||| || |
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| T |
36327772 |
ggaagctttctcatggcttcagtaaatccttcatctgtaatcttcgagcaatttacaagccccatgcaaagtaggtgactgccactgtaaaatttatatt |
36327871 |
T |
|
| Q |
135 |
agaaagaactattaaaa |
151 |
Q |
| |
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| |||||| |||||||| |
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| T |
36327872 |
aaaaagaagtattaaaa |
36327888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 296
Target Start/End: Original strand, 36326055 - 36326127
Alignment:
| Q |
224 |
tgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaagatgaccgcaact |
296 |
Q |
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|||||||||||||||||||| || |||||||||| || ||||||||||||| |||||||||||||||||| |
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| T |
36326055 |
tgtcggctatgcatttgaggagatcattggtgcaaaaacgctcaatatcaatgacttcaagatgaccgcaact |
36326127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 323
Target Start/End: Original strand, 36327911 - 36328050
Alignment:
| Q |
184 |
ttgaatgcaggaacaaattgagattttggtattaattacctgtcggctatgcatttgagggtattattggtgcaataatactcaatatcaatgttttcaa |
283 |
Q |
| |
|
||||||||| ||| ||| | ||||||||||||||||||| | || |||||| | |||||| || | |||||||| || |||||||| |||| ||| | |
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| T |
36327911 |
ttgaatgcaagaataaaataagattttggtattaattacttttcagctatgaacttgaggagatcactggtgcaaaaacgctcaatatatatgtcttcga |
36328010 |
T |
|
| Q |
284 |
gatgaccgcaactccgtttgataacattgcaacaaatctt |
323 |
Q |
| |
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|||||| || ||| | ||||| | |||||||||| ||||| |
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| T |
36328011 |
gatgactgctacttcttttgacagcattgcaacatatctt |
36328050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 126
Target Start/End: Original strand, 36336363 - 36336391
Alignment:
| Q |
98 |
catgcaacgtaggtgactgccactgtaaa |
126 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36336363 |
catgcaacgtaggtgactgccactgtaaa |
36336391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 16053231 - 16053333
Alignment:
| Q |
29 |
taaccgcggaagctttctgacagcttcactaaatcctttatttgtaatccccaaacaacgtacaagccacatgcaacgtaggtgactgccactgtaaaat |
128 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||||| | || ||| | | ||| ||||| || |||| |||||||||||||||||||||||||| |
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| T |
16053231 |
taacagcggaagcttcctcacagcttcactaaatccttcttctgaaatttcatagcaatctacaaaccgcatggaacgtaggtgactgccactgtaaaat |
16053330 |
T |
|
| Q |
129 |
tta |
131 |
Q |
| |
|
||| |
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|
| T |
16053331 |
tta |
16053333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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