View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_1 (Length: 761)
Name: NF9939_low_1
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 48568266 - 48567921
Alignment:
| Q |
19 |
gaagtaacataattttcacaaggatagatgaaaagaaatgtatctgtagtttgcaaagtgtgacatcacttaaagtatggacgaacgaaaatggatgaag |
118 |
Q |
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| T |
48568266 |
gaagtaacataattttcacaaggatagatgaaaagaaatgtatctgtagtttgcaaagtgtgacatcacttaaagtatggacgaacgaaaatggatgaag |
48568167 |
T |
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| Q |
119 |
ataacgagagaaacatgtgaaaaaatatcaaagtttattatttttacatcaaaaacacatccaataagtgggatctagcaaataagtcaaatttttgttc |
218 |
Q |
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| T |
48568166 |
ataacgagagaaacatgtgaaaaaatatcaaagtttattatttttacatcaaaaacacatccaataagtgtgatctagcaaataagtcaaatttttgttc |
48568067 |
T |
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| Q |
219 |
ttttcttatttccattcttaattctgtttacatcatttcaactctcttgaggctttcaaatatgcttggatatctctttcaaattaatcaattttgaatg |
318 |
Q |
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| T |
48568066 |
ttttcttatttccattcttaattctgtttaaatcatttcaactctcttgaggctttcaaatatgctcggatatctctttcaaattaatcaattttgaatg |
48567967 |
T |
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| Q |
319 |
acctaaaatgttaactatagacctgctcttaagtacttataccttg |
364 |
Q |
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| T |
48567966 |
acctaaaatgttaactatagacctgctcttaagtacttataccttg |
48567921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 510 - 752
Target Start/End: Complemental strand, 48565444 - 48565207
Alignment:
| Q |
510 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaaataactcagattaaatgaaaaagactta |
609 |
Q |
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| T |
48565444 |
atagaataagcctttggtcatcatggttagactagactgtagaaatctcggaaattcactagcggtatttaa----ctcagattaaatgaaaa-gactta |
48565350 |
T |
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| Q |
610 |
tgttagttagcatgcagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
709 |
Q |
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| T |
48565349 |
tgttagttagcatgtagaagtcatcaaatgtttagtttttataagtttgcaccgcaagataatgtaaatcaatatgaactaacaaaaaataattttatta |
48565250 |
T |
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| Q |
710 |
aactaccaagtgaatcggtatgcatttgctttcctatgctact |
752 |
Q |
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| T |
48565249 |
aactaccaagtgaatcggtatgcatttgctttcctatgatact |
48565207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 438 - 498
Target Start/End: Complemental strand, 48565548 - 48565488
Alignment:
| Q |
438 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatccctca |
498 |
Q |
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| T |
48565548 |
agagaaaaaagagggagattgcacacacttcaaatatgatgattcaatttcccatacctca |
48565488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 360 - 390
Target Start/End: Complemental strand, 48565601 - 48565571
Alignment:
| Q |
360 |
ccttgtgaagagaggacgaaccagtgacata |
390 |
Q |
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| T |
48565601 |
ccttgtgaagagaggacgaaccagtgacata |
48565571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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