View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_11 (Length: 253)
Name: NF9939_low_11
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18303441 - 18303202
Alignment:
| Q |
1 |
taagtgtcggagaggcgcgttgagttgttttggaagggatgaagtggttttgatggaagacgcctccgggtgagaggacggaggaaaccgggtctgcgtg |
100 |
Q |
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| T |
18303441 |
taagtgtcggagaggcgcgttgagttgttttggaagggatgaagtggttttgatggaagacgcctccgggtgagaggacagaggaaaccgggtctgcgtg |
18303342 |
T |
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| Q |
101 |
gatatagatgttgaagaggtggttgttttcggcaaagaatatttcccacaaaggagcaaaggtgaagttggtgtttgtgaggaagaggaaggcgattttg |
200 |
Q |
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| T |
18303341 |
gatgtagatgttgaagaggtggttgtttccagtaaagaatatttcccacaaaggagcaaaggtgaagttggtgtttgtgaggaagaggaaggcgattttg |
18303242 |
T |
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| Q |
201 |
ggtttagggttcttgagggtaaataagtggggtgatgtcc |
240 |
Q |
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| T |
18303241 |
ggtttagggttcttgagggtaaataagtggggtgttgtcc |
18303202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 18340350 - 18340493
Alignment:
| Q |
90 |
gggtctgcgtggatatagatgttgaagaggtggttgttttcggcaaagaatatttccc-acaaaggagcaaaggtgaagttggtgtttgtgaggaagagg |
188 |
Q |
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| T |
18340350 |
gggtctgcatggatgtatatattgaagagatggttgtttccggtgaagaatttttccccataaaggagcaaaggtgaggttggtgttggtgaggaagagg |
18340449 |
T |
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| Q |
189 |
aaggcgatttt-gggtttagggttcttgagggtaaataagtggg |
231 |
Q |
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| T |
18340450 |
aaagcgattttaggttttagggtttgtgagggtggataagtggg |
18340493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 18345523 - 18345623
Alignment:
| Q |
105 |
tagatgttgaagaggtggttgttttcggcaaagaatatttcccacaaaggagcaaaggtgaagttggtgtttgtgaggaagaggaaggcgattttgggtt |
204 |
Q |
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| T |
18345523 |
tagatgttgaagaggtggttgtttccaacgaagaatttttcccataaaggagcgaaggtgaggttagagttggtgaggaagaggaaagcgattttgggtt |
18345622 |
T |
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| Q |
205 |
t |
205 |
Q |
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| T |
18345623 |
t |
18345623 |
T |
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