View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_12 (Length: 249)
Name: NF9939_low_12
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 24013948 - 24014186
Alignment:
| Q |
1 |
tcaaacccaactacaatgcaaagaaaaatcaagaataacaccattgaaaaggatccacatgagaaagatacaaatcaatgcacagaacgtccaagaagag |
100 |
Q |
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| T |
24013948 |
tcaaacccaactacaatgcaaagaaaaatcaagaataacaccattgaaaaggatccacatgagaaagatacaaatcaatgcacagaacgtccaagaagag |
24014047 |
T |
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| Q |
101 |
ggcgtataatataagcaatcaaattaaaattgaaaaggatccacatcaaaatttggagattaaatggtttggtcattagatgaatacccctaaagctttc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24014048 |
agcgtattatataagcaatcaaattaaaattgaaaaggatccacatcaaaatttggagattaaatggtttgttcattagatgaatacccctaaagctttc |
24014147 |
T |
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| Q |
201 |
aatacatgctcaggtgcaatcgtccttctttcctctctg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
24014148 |
aatacatgctcaggtgcaatcgtccttctttcctctctg |
24014186 |
T |
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