View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_13 (Length: 241)
Name: NF9939_low_13
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43601286 - 43601063
Alignment:
| Q |
1 |
acatatataatgtaaaatcatgatctttgctcataaaaaataaatgtagaaccataaagtattatagaataagcacaatatttcctttaccttggcttga |
100 |
Q |
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| T |
43601286 |
acatatataatgtaaaatcatgatctttgctcataaaaaataaatgtagaaccataaagtagtatagaataagcacaatatttcctttaccttggcttga |
43601187 |
T |
|
| Q |
101 |
tcacatacagaagaatgaatcctatagcacagaacaaggatagtccaccaacacaaaggtaggcaacccccaagaatctatttttcccaccaatccaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43601186 |
ccacatacagaagaatgaatcctatagcacagaacaaggatagtccaccaacacaaaggtaggcaacccccaagaatctatttttcccaccaatccaagt |
43601087 |
T |
|
| Q |
201 |
tgtagttgatagaaccaacttctt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
43601086 |
tgtagttgatagaaccaacttctt |
43601063 |
T |
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