View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9939_low_2 (Length: 454)

Name: NF9939_low_2
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9939_low_2
NF9939_low_2
[»] chr8 (3 HSPs)
chr8 (19-454)||(9692286-9692722)
chr8 (18-454)||(9675263-9675700)
chr8 (204-371)||(21463943-21464111)
[»] chr4 (3 HSPs)
chr4 (72-454)||(35162559-35162942)
chr4 (81-454)||(35155539-35155913)
chr4 (198-369)||(15556218-15556390)
[»] chr3 (30 HSPs)
chr3 (190-389)||(47397047-47397247)
chr3 (198-454)||(46236538-46236801)
chr3 (198-406)||(16025653-16025862)
chr3 (185-403)||(5160446-5160668)
chr3 (198-403)||(46526169-46526378)
chr3 (198-403)||(5156417-5156626)
chr3 (198-403)||(45883483-45883686)
chr3 (195-371)||(46479994-46480171)
chr3 (47-155)||(46236374-46236482)
chr3 (197-409)||(46539163-46539376)
chr3 (196-366)||(46544681-46544852)
chr3 (193-387)||(46498136-46498331)
chr3 (62-156)||(47413795-47413889)
chr3 (197-454)||(46484169-46484419)
chr3 (292-387)||(46554026-46554121)
chr3 (198-387)||(46548750-46548940)
chr3 (195-260)||(4581132-4581197)
chr3 (195-260)||(4613589-4613654)
chr3 (55-156)||(46480222-46480323)
chr3 (281-389)||(51944076-51944185)
chr3 (196-272)||(47413941-47414017)
chr3 (51-156)||(16025907-16026012)
chr3 (198-259)||(46532224-46532285)
chr3 (51-159)||(5156671-5156779)
chr3 (313-385)||(45903145-45903217)
chr3 (51-142)||(46474366-46474457)
chr3 (198-256)||(46474243-46474301)
chr3 (218-260)||(53390988-53391030)
chr3 (193-250)||(46491029-46491086)
chr3 (51-156)||(51944319-51944424)
[»] chr2 (3 HSPs)
chr2 (185-414)||(20144790-20145020)
chr2 (231-414)||(20359300-20359484)
chr2 (185-414)||(20168754-20168984)
[»] chr7 (5 HSPs)
chr7 (213-333)||(17708515-17708636)
chr7 (196-295)||(17699445-17699544)
chr7 (228-295)||(17736208-17736275)
chr7 (213-295)||(16722431-16722513)
chr7 (196-333)||(17718339-17718477)


Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Original strand, 9692286 - 9692722
Alignment:
Q  19 tgagtgatgcagttgactgcggtacgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctct 118  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9692286 tgagtgatgcaattgattgcggtacgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctct 9692385  T
Q  119 aattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatggccaccactgcaacactggccgcagcagcttcagtgccttcc 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  |||||||||||||||||||    
T  9692386 aattagaaataggaaagggtgatcggctataaagtctattccagttggcatacacatggccaccactgcaatattggccttagcagcttcagtgccttcc 9692485  T
Q  219 tcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttgttaaacctccagaagagaaag 317  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  9692486 tcgtttacttcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaag 9692585  T
Q  318 gtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactctcactagtttata 417  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9692586 gtaaactcactcctaactccttcgtcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctattctcactagtttata 9692685  T
Q  418 aggaagcttgtgctctagtaactcaaattcagaagcc 454  Q
    |||||||||||||||||| ||||||||||||||||||    
T  9692686 aggaagcttgtgctctaggaactcaaattcagaagcc 9692722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 9675263 - 9675700
Alignment:
Q  18 atgagtgatgcagttgactgcggtacgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctc 117  Q
    |||||||||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9675263 atgagtgatgcaattgattgcggtttgagaagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctc 9675362  T
Q  118 taattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatggccaccactgcaacactggccgcagcagcttcagtgccttc 217  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| | || | | |  | || |||| | ||||||||||||||||||    
T  9675363 taattagaaataggaaagggtgatcggctataaagtctattccagttggcgcacacaagacccctattttagcattggctgtagcagcttcagtgccttc 9675462  T
Q  218 ctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt-gttaaacctccagaagagaaa 316  Q
    ||| ||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  9675463 ctcatttacttcaatggtagacttgtgaaatatgttggaaacagaaaagtcttgaccttcaagagagtccaccatttttgtcaaacctccagaagagaaa 9675562  T
Q  317 ggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactctcactagtttat 416  Q
    |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||    
T  9675563 ggtaaaatcactcctagctccttcatcattcgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaaattacctactttcactcgtttat 9675662  T
Q  417 aaggaagcttgtgctctagtaactcaaattcagaagcc 454  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  9675663 aaggaagcttgggctctaggaactcaaattcagaagcc 9675700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 371
Target Start/End: Original strand, 21463943 - 21464111
Alignment:
Q  204 gcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttgttaaac 302  Q
    ||||| || ||||| |||||||| ||||| ||||||||||||||||||||||| ||| |||||| |||| |     |||||||||||| |||||| |||     
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatatgttggacacataaaggttttgagcaattcgagagtccaccatttttgtcaaag 21464042  T
Q  303 ctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaa 371  Q
    ||||   |||||||||||||  ||| |||| ||| |||| ||||  ||||  |||||||||||| ||||    
T  21464043 ctccttcagagaaaggtaaaaccacgcctagctctttcagcatatcagaacattcaagcccaaaagaaa 21464111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 72 - 454
Target Start/End: Complemental strand, 35162942 - 35162559
Alignment:
Q  72 ttgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatac 171  Q
    ||||| || ||||| ||||||| ||| |||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||||| ||| ||||| ||||    
T  35162942 ttgagcacttgtcccgcaaagaggattgtttgggtcgaatcttctctaattagaaataagaaaggatgatcagctataaagtctactccggttggaatac 35162843  T
Q  172 acatggccaccactgcaacactggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttg 271  Q
    || ||||||  | ||||   ||||| ||||||||| | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||||| |||    
T  35162842 acttggccataagtgcacagctggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatatgttggaaactaaaaggttttg 35162743  T
Q  272 accttcaagagagtccaccatttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaa 370  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||||||| |||||||||  ||||||| || ||||||||||||||||||| |||||    
T  35162742 accttcaagtgagtccaccatttttgtcaaacctccagaagagaaaggtaaaatcactcctagatccttcagcacacgagaagtttcaagcccatatgaa 35162643  T
Q  371 aatttgaatcttggaatttggaattcacctactctcactagtttataaggaagcttgtgctctagtaactcaaattcagaagcc 454  Q
    ||||||||| ||||||||| |||  ||||||||  ||||   ||| |||||||| ||| |||||| | |||||| |||||||||    
T  35162642 aatttgaattttggaattttgaagccacctactggcactctattacaaggaagcatgttctctaggagctcaaaatcagaagcc 35162559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 81 - 454
Target Start/End: Complemental strand, 35155913 - 35155539
Alignment:
Q  81 tgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtctattccagttggcatacacatggcca 180  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| |||||  ||||||||||| ||||||||||||| ||| ||||   ||| || ||  |    
T  35155913 tgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtccggttgatctacccaaggtaa 35155814  T
Q  181 ccactgcaacactggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaag 280  Q
      | || |  |||||| ||| |||||| ||||||||  |||||||| ||||| ||| |||| ||||||||||||  ||| || || | ||||||||||||    
T  35155813 ataatgtagtactggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatatgttgctaacggagagattttgaccttcaag 35155714  T
Q  281 agagtccaccatttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaat 379  Q
    ||||||||||||||| || ||||| |||||||||||||||||| |||||||||  || |||| |||| |||||| |||||||  | ||||||||||||||    
T  35155713 agagtccaccatttttgtcaaacccccagaagagaaaggtaaaatcactcctaggtctttcagcatatgagaagattcaagcttagatgaaaatttgaat 35155614  T
Q  380 cttggaatttggaattcacctactctcactagtttataaggaagcttgtgctctagtaactcaaattcagaagcc 454  Q
    |||||||||| |||  ||||||||| | ||  |||||||||||||||||||||||| ||||||||||||||||||    
T  35155613 cttggaattttgaagccacctactcgcgctgttttataaggaagcttgtgctctagcaactcaaattcagaagcc 35155539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 369
Target Start/End: Complemental strand, 15556390 - 15556218
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt-g 296  Q
    |||||||||||||||||||| |||||||| |  ||||||||||| || |||||||| |||||| | |||||||||||  |||| |||||||||||||| |    
T  15556390 gcagcagcttcagtgccttcttcgtttacttggatgaaagacttttggaatatgttagaaacaaacaggtcttgacccgcaagtgagtccaccattttag 15556291  T
Q  297 ttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatga 369  Q
    | |||||||| | |||||||||||||  ||||||||  ||||||| ||||  ||||||||||| |||||||||    
T  15556290 tcaaacctccgggagagaaaggtaaaaccactcctaggtccttcagcatatcagaagtttcaaacccaaatga 15556218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 190 - 389
Target Start/End: Original strand, 47397047 - 47397247
Alignment:
Q  190 cactggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccac 289  Q
    |||| |||| |||| ||| |||||||| ||| ||||| ||||||||| |||| |||||||||||||||||| |||||| ||||||  | ||| ||||||     
T  47397047 cactagccgaagcaactttagtgcctttctcatttacttcaatgaaatacttctgaaatatgttggaaacaaaaaggttttgacccgctagaaagtccat 47397146  T
Q  290 catttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatt 388  Q
    |||||| |||||||||||    |||||||||||| |||||||||||||||||| ||||  |||||||||||||| || ||||||||||||||||||||||    
T  47397147 catttttgttaaacctccgagggagaaaggtaaaatcactcctaactccttcaacatatcagaagtttcaagccaaattgaaaatttgaatcttggaatt 47397246  T
Q  389 t 389  Q
    |    
T  47397247 t 47397247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 198 - 454
Target Start/End: Original strand, 46236538 - 46236801
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagag---tccaccattt 294  Q
    |||||| ||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||| | |||| || ||| |||| |||    ||||| ||||    
T  46236538 gcagcaacttcagtgccttcttcatttacttcaatgaaagatttgtgaaatatgttggaaacatataggttttcaccctcaaaagaagaatccacaattt 46236637  T
Q  295 t-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaa 393  Q
    | || |||||||||| ||||||||||||| |||||||||||||||||||| ||  || ||||||||  ||||| ||||  |||||||||||||| | |||    
T  46236638 ttgtaaaacctccagcagagaaaggtaaaatcactcctaactccttcatcgtattagtagtttcaattccaaacgaaatattgaatcttggaatcttgaa 46236737  T
Q  394 ttcacctactctcactagttta---taaggaagcttgtgctctagtaactcaaattcagaagcc 454  Q
     ||||||||   ||||  ||||     |||||| ||||| ||| ||||||||||||||||||||    
T  46236738 ctcacctaccgccacttttttaatgagaggaagattgtgttctggtaactcaaattcagaagcc 46236801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 198 - 406
Target Start/End: Complemental strand, 16025862 - 16025653
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt-g 296  Q
    |||||| ||||||| ||||| || ||||| || |||||||| ||||||||||||   |||||| | |||||||||  ||||||| ||||||||||||| |    
T  16025862 gcagcaacttcagttccttcttcatttacttcgatgaaagatttgtgaaatatgcgagaaacaaagaggtcttgatgttcaagaaagtccaccatttttg 16025763  T
Q  297 ttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattc 396  Q
    | |||||||||| |||||||||||||   ||||| | |||||||| ||||  ||||||||||| |||||||||||  ||||| |||||||||  ||| ||    
T  16025762 tcaaacctccaggagagaaaggtaaaactactccaagctccttcagcatatcagaagtttcaaacccaaatgaaaccttgaaccttggaattctgaaatc 16025663  T
Q  397 acctactctc 406  Q
    ||||||||||    
T  16025662 acctactctc 16025653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 403
Target Start/End: Complemental strand, 5160668 - 5160446
Alignment:
Q  185 tgcaacactggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagaga- 283  Q
    |||| ||||| | ||| |||||||||  ||||| || ||||| ||||||||||| ||||||||||| || ||||| ||||||   | |||  |||||||     
T  5160668 tgcagcactgactgcaacagcttcagcaccttcttcatttacttcaatgaaagatttgtgaaatattttagaaactgaaaggctatcacccacaagagaa 5160569  T
Q  284 --gtccaccatttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatc 380  Q
      |||||||||||| || |||||| ||  || |||||||||| |||||||||||||||||| ||||  ||||||||||||| ||||||||| ||||||||    
T  5160568 gagtccaccatttttgtcaaaccttcacgagtgaaaggtaaagtcactcctaactccttcagcatatcagaagtttcaagctcaaatgaaattttgaatc 5160469  T
Q  381 ttggaatttggaattcacctact 403  Q
    ||||||||  |||||||||||||    
T  5160468 ttggaattctgaattcacctact 5160446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 403
Target Start/End: Original strand, 46526169 - 46526378
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaag---agagtccaccat-t 293  Q
    ||||||||||| |||||| |||| ||||| ||||||| ||||||||||||||| ||||||||  |||||| ||||| | |  |   ||||||||| || |    
T  46526169 gcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaacgtaaaggttttgacttgcgtgttgagagtccacaatat 46526268  T
Q  294 ttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaa 393  Q
    |||| ||||| ||| |||||||||||||| ||||| ||||||| |||| |||  ||||||| |||||| ||||||||||||||||| ||||||||  |||    
T  46526269 ttgtcaaacccccacaagagaaaggtaaaatcacttctaactctttcaacatttgagaagtgtcaagctcaaatgaaaatttgaattttggaattctgaa 46526368  T
Q  394 ttcacctact 403  Q
     |||||||||    
T  46526369 atcacctact 46526378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 198 - 403
Target Start/End: Complemental strand, 5156626 - 5156417
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaagg-tcttgaccttcaagag---agtccaccatt 293  Q
    |||||||||||||||||||| || ||||| ||||||||||| ||||||||||| || |||||||||||| | ||| ||  ||||||   |||||||||||    
T  5156626 gcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaacagaaaggctattgccca-caagaggagagtccaccatt 5156528  T
Q  294 tt-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttgga 392  Q
    || || |||||||||  || |||||||||| ||||||||| ||| || | ||||   |||||||||||| ||||||||| ||||||||||||||||  ||    
T  5156527 tttgtcaaacctccacgagtgaaaggtaaaatcactcctagctctttgaacatatcggaagtttcaagctcaaatgaaattttgaatcttggaattctga 5156428  T
Q  393 attcacctact 403  Q
    ||||| |||||    
T  5156427 attcaactact 5156417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 198 - 403
Target Start/End: Original strand, 45883483 - 45883686
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt-g 296  Q
    |||||||||||||||||||| || || || ||||||||||||| |||||| ||||  |||| | |||||||||||  |    || ||||||||||||| |    
T  45883483 gcagcagcttcagtgccttcttcattaacttcaatgaaagactagtgaaaaatgtgagaaatataaaggtcttgatttg---gatagtccaccatttttg 45883579  T
Q  297 ttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattc 396  Q
    | |||| ||||  |||||||||| ||  ||||||||||||||||| ||||  |||||||||||||||||||||||  |||||||||||||||  ||| ||    
T  45883580 tcaaacttccacgagagaaaggtgaaaccactcctaactccttcaacatattagaagtttcaagcccaaatgaaacattgaatcttggaattctgaagtc 45883679  T
Q  397 acctact 403  Q
    |||||||    
T  45883680 acctact 45883686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 195 - 371
Target Start/End: Complemental strand, 46480171 - 46479994
Alignment:
Q  195 gccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccat-t 293  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| |||||| |||||   |   ||||| |||||| |    
T  46480171 gccgcagcagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggttttgactaactgaagagttcaccatct 46480072  T
Q  294 ttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaa 371  Q
    |||| | |||||||  |||||||||||||  ||| |||| |||||| | ||||  |||||||||||| ||||||||||    
T  46480071 ttgtcagacctccaccagagaaaggtaaaaccacacctagctcctttagcatatcagaagtttcaagtccaaatgaaa 46479994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 46236374 - 46236482
Alignment:
Q  47 aagttaagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggct 146  Q
    |||||||||||| ||||||| ||||||||| |||||||| ||||||| ||| |||  ||||||| ||||||||||||||||||| ||||||||||| |||    
T  46236374 aagttaagatcatccaacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagct 46236473  T
Q  147 ataaagtct 155  Q
    | |||||||    
T  46236474 acaaagtct 46236482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 409
Target Start/End: Complemental strand, 46539376 - 46539163
Alignment:
Q  197 cgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt- 295  Q
    |||||||||||  || ||||  || ||||| ||||| ||||||||||| ||||  | ||||||| |||||| ||||| |  | ||||||||||||||||     
T  46539376 cgcagcagctttggttccttgttcatttacttcaataaaagacttgtggaatacatcggaaacataaaggttttgacttgtaggagagtccaccattttt 46539277  T
Q  296 gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaatt 395  Q
    || ||||||||   |||||||||||||  || ||||| |||||| | ||||  ||||||||||||| |||| |||| ||||||||||||||||  ||| |    
T  46539276 gtcaaacctccttgagagaaaggtaaaaccattcctagctccttaagcatattagaagtttcaagctcaaaagaaattttgaatcttggaattctgaagt 46539177  T
Q  396 cacctactctcact 409  Q
    ||||||||| ||||    
T  46539176 cacctactcgcact 46539163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 196 - 366
Target Start/End: Complemental strand, 46544852 - 46544681
Alignment:
Q  196 ccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccat-tt 294  Q
    |||||||||||||||| || |  || ||||| ||||| ||||||||||| ||||||||||||| |  ||||| |||| |   | ||||||||||||| ||    
T  46544852 ccgcagcagcttcagttcccttttcatttacttcaataaaagacttgtggaatatgttggaaatatgaaggttttgatccataggagagtccaccatatt 46544753  T
Q  295 tgttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaa 366  Q
    ||| |||||||| | |||||||||||||  |||||||| |||||||| ||  | ||||||||||||||||||    
T  46544752 tgtcaaacctcctgtagagaaaggtaaaaccactcctagctccttcagcacgccagaagtttcaagcccaaa 46544681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 193 - 387
Target Start/End: Complemental strand, 46498331 - 46498136
Alignment:
Q  193 tggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccat 292  Q
    |||||||||||||||  |||||||| || ||||| ||||||||||||||||| ||||| ||||||||| |||||| |||||   ||  ||||| ||||||    
T  46498331 tggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaacataaaggttttgactcacagcagagttcaccat 46498232  T
Q  293 ttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaat 387  Q
    ||| || |||||||||  || |||||| |||  ||| || | |||||| | ||||  ||||||||||||  |||||||||  ||||| ||||||||    
T  46498231 tttagtcaaacctccattagtgaaaggcaaaaccacgccaagctcctttaacatatcagaagtttcaagttcaaatgaaatattgaaccttggaat 46498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 47413795 - 47413889
Alignment:
Q  62 aacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtcta 156  Q
    ||||||||||||||| || |||||  |||||| ||| |||| ||| ||||||||||||||||||||||  |||||||| ||||||| ||||||||    
T  47413795 aacaagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtcta 47413889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 454
Target Start/End: Complemental strand, 46484419 - 46484169
Alignment:
Q  197 cgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccat-ttt 295  Q
    ||||||||||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||  ||| |||| | ||||  ||    ||||| |||||| |||    
T  46484419 cgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatatattgg--acacaaagtttttga--tt----agagttcaccatcttt 46484328  T
Q  296 gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaatt 395  Q
    || | |||||||  |||||||||||||  ||| |||| |||||| | ||||  |||||||||||| ||||||||||  |||||  |||||||    || |    
T  46484327 gtcagacctccaccagagaaaggtaaaaccacacctagctcctttagcataacagaagtttcaagtccaaatgaaatattgaactttggaatcctaaagt 46484228  T
Q  396 cacctactctcactagtttataaggaagcttgtgctctagtaactcaaattcagaagcc 454  Q
    ||||||||  ||||   | | ||||||||||||| | |||||| |||||||||||||||    
T  46484227 cacctacttccactttatcaaaaggaagcttgtgttgtagtaaatcaaattcagaagcc 46484169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 46554026 - 46554121
Alignment:
Q  292 ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaat 387  Q
    ||||||||||||||||  ||||||||||||| ||||||| |||||||||| ||||  ||||  ||||| |||||| |||| || ||| ||||||||    
T  46554026 ttttgttaaacctccattagagaaaggtaaaatcactcccaactccttcagcatattagaaagttcaaacccaaaagaaatttcgaaacttggaat 46554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 387
Target Start/End: Original strand, 46548750 - 46548940
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttg 296  Q
    |||||||||||| | ||||| || ||||| ||||||||||||||||||||||| || |||||| |||||| || | |   | |||||| ||||| |||||    
T  46548750 gcagcagcttcattaccttcttcttttacttcaatgaaagacttgtgaaatattttagaaacataaaggtatttatcaataggagagttcaccatttttg 46548849  T
Q  297 ttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaat 387  Q
    | ||||| |||| | ||||||||| |   |||||||  ||||| | || |   |||||||||||| ||||| | | |||||||||||||||    
T  46548850 tcaaaccaccaggatagaaaggtagatcaactcctagttccttgagcacatttgaagtttcaagctcaaataatattttgaatcttggaat 46548940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 4581132 - 4581197
Alignment:
Q  195 gccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaaca 260  Q
    ||||||||||||||||| ||| | || ||||| ||||| ||||||||||||||||| |||||||||    
T  4581132 gccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4581197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 195 - 260
Target Start/End: Original strand, 4613589 - 4613654
Alignment:
Q  195 gccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaaca 260  Q
    ||||||||||||||||| ||| | || ||||| ||||| ||||||||||||||||| |||||||||    
T  4613589 gccgcagcagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatatcttggaaaca 4613654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 46480323 - 46480222
Alignment:
Q  55 atcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataaagtc 154  Q
    |||||||| ||||||||||||| ||||||||  |||||||||| |||  |||| | ||||||||||| | |||||  |||||||| || |||| ||||||    
T  46480323 atcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaagtc 46480224  T
Q  155 ta 156  Q
    ||    
T  46480223 ta 46480222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 389
Target Start/End: Complemental strand, 51944185 - 51944076
Alignment:
Q  281 agagtccaccatttt-gttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaat 379  Q
    ||||||||||||||| || ||||||||||  ||||||||||||  |||||||| || ||| | |||||||| || ||||||| |||||||||  ||||||    
T  51944185 agagtccaccatttttgtaaaacctccaggtgagaaaggtaaaaccactcctagcttctttagcatacgagtagcttcaagctcaaatgaaatattgaat 51944086  T
Q  380 cttggaattt 389  Q
     | |||||||    
T  51944085 ttcggaattt 51944076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 47413941 - 47414017
Alignment:
Q  196 ccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttga 272  Q
    |||||||||||||||| ||||| || || || || |||||||||||||||||||| | ||||||| || ||||||||    
T  47413941 ccgcagcagcttcagttccttcttcattcacttcgatgaaagacttgtgaaatatctgggaaacaaaatggtcttga 47414017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 16026012 - 16025907
Alignment:
Q  51 taagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataa 150  Q
    ||||||||| |||||| ||||||||| || || ||  |||||| ||| |||| |||  |||||||||||||||||||||  |||||||| || |||| ||    
T  16026012 taagatcactcaacaaaaggattgagtacttgccctacaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaa 16025913  T
Q  151 agtcta 156  Q
    | ||||    
T  16025912 aatcta 16025907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 46532285 - 46532224
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaac 259  Q
    |||||||||||||||||||  || ||||| ||||||||||| || ||||||||||| |||||    
T  46532285 gcagcagcttcagtgcctttttcatttacttcaatgaaagaattttgaaatatgttagaaac 46532224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 51 - 159
Target Start/End: Complemental strand, 5156779 - 5156671
Alignment:
Q  51 taagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataa 150  Q
    ||||||||| || |||| |||||||| || |||||  ||||||  || |||   ||||| | |||||||||||||||||  ||||||||||| |||| ||    
T  5156779 taagatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctacaa 5156680  T
Q  151 agtctattc 159  Q
    |||||||||    
T  5156679 agtctattc 5156671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 45903217 - 45903145
Alignment:
Q  313 gaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttgga 385  Q
    |||||||||||| ||| ||| ||| | || ||||||||||  ||||| ||||||||||||||||||| |||||    
T  45903217 gaaaggtaaacttacttctagctcttgcaacatacgagaaacttcaaacccaaatgaaaatttgaattttgga 45903145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 46474457 - 46474366
Alignment:
Q  51 taagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatc 142  Q
    |||||||||||| |||||||||| || ||||||||  |||||||||| |||  || | |||| |||||||||||| |||  || ||||||||    
T  46474457 taagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttccggccaaatcatctctaattagatataagaatgggtgatc 46474366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 46474301 - 46474243
Alignment:
Q  198 gcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttgga 256  Q
    |||||||||||||||||||| || ||||| ||||||||| | ||||| ||||| |||||    
T  46474301 gcagcagcttcagtgccttcttcatttacttcaatgaaatatttgtgcaatatattgga 46474243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 53391030 - 53390988
Alignment:
Q  218 ctcgtttacgtcaatgaaagacttgtgaaatatgttggaaaca 260  Q
    ||||||||| ||||||||||||||||||||||| || ||||||    
T  53391030 ctcgtttacttcaatgaaagacttgtgaaatatatttgaaaca 53390988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 46491086 - 46491029
Alignment:
Q  193 tggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatat 250  Q
    |||| ||| ||||||| |||||||| || ||||| ||||| |||||||||||||||||    
T  46491086 tggctgcaacagcttcggtgccttcttcatttacatcaataaaagacttgtgaaatat 46491029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 51944424 - 51944319
Alignment:
Q  51 taagatcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcgaatcttctctaattagaaatagaaaagggtgatcggctataa 150  Q
    |||||||||||   ||| || ||||| ||||||||  |||||||||| |||   ||| ||||||||||||| |||||||  |||||||| || |||| ||    
T  51944424 taagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctacaa 51944325  T
Q  151 agtcta 156  Q
    ||||||    
T  51944324 agtcta 51944319  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 414
Target Start/End: Complemental strand, 20145020 - 20144790
Alignment:
Q  185 tgcaacactggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagag 284  Q
    |||| |||| || |||||| |||| || ||||| ||||||||    ||||||||||||||||||||||  ||||||||||||  ||||||  ||||||||    
T  20145020 tgcagcactagctgcagcaacttcggtaccttcttcgtttactctgatgaaagacttgtgaaatatgtgagaaacagaaaggctttgacccgcaagagag 20144921  T
Q  285 tccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttg 383  Q
    ||||||| |||||| |||||||||| | |||| ||||||  ||||||||||||||| |   ||  |  ||||||||||||||||||||  ||||||||||    
T  20144920 tccaccatttttgtcaaacctccaggaaagaatggtaaaaccactcctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttg 20144821  T
Q  384 gaatttggaattcacctactctcactagttt 414  Q
    ||||||  |||||||||||| ||||| ||||    
T  20144820 gaattttaaattcacctactttcacttgttt 20144790  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 20359484 - 20359300
Alignment:
Q  231 atgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccattttgtt-aaacctccagaagagaaaggtaaactcactc 329  Q
    |||||||||||||||||||||   |||||| |||||  ||||||  | | ||| ||||||||||| || |||||||||| | |||| |||||| ||||||    
T  20359484 atgaaagacttgtgaaatatgcgagaaacaaaaaggctttgacccgcgatagaatccaccatttttttcaaacctccaggaaagaatggtaaagtcactc 20359385  T
Q  330 ctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttggaatttggaattcacctactctcactagttt 414  Q
    |||||||||| |   ||  |  ||||||||||||||||||||  ||||||||||||||||  |||||||||||| ||||| ||||    
T  20359384 ctaactcctttagggtatcactagtttcaagcccaaatgaaacattgaatcttggaattttaaattcacctactttcacttgttt 20359300  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 414
Target Start/End: Original strand, 20168754 - 20168984
Alignment:
Q  185 tgcaacactggccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagag 284  Q
    |||| |||| || |||||| |||| || ||||| ||||||||    ||||||||||||||||||||||  |||||| |||||  ||||||  | | |||     
T  20168754 tgcagcactagctgcagcaacttcggtaccttcttcgtttactctgatgaaagacttgtgaaatatgtgagaaacaaaaaggctttgacccgcgatagaa 20168853  T
Q  285 tccacca-ttttgttaaacctccagaagagaaaggtaaactcactcctaactccttcatcatacgagaagtttcaagcccaaatgaaaatttgaatcttg 383  Q
    ||||||| |||||| |||||||||| | |||| |||||| ||||||||||| |||| |   ||  |  ||||||||||||||||||||  |||||||| |    
T  20168854 tccaccatttttgtcaaacctccaggaaagaatggtaaaatcactcctaacccctttagggtatcactagtttcaagcccaaatgaaacattgaatctag 20168953  T
Q  384 gaatttggaattcacctactctcactagttt 414  Q
    ||||||  || ||||||||| ||||| ||||    
T  20168954 gaattttaaagtcacctactttcacttgttt 20168984  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 333
Target Start/End: Complemental strand, 17708636 - 17708515
Alignment:
Q  213 ccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttttgttaaacctccagaag 311  Q
    ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | |||||||||||| |||||| ||||||||   ||    
T  17708636 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttttgtcaaacctcccatag 17708537  T
Q  312 agaaaggtaaactcactcctaa 333  Q
    | ||||||||| ||| ||||||    
T  17708536 aaaaaggtaaagtcaatcctaa 17708515  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 17699544 - 17699445
Alignment:
Q  196 ccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 295  Q
    |||| |||||||  || ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | ||||||||||||||||    
T  17699544 ccgctgcagctttcgtaccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttt 17699445  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 17736275 - 17736208
Alignment:
Q  228 tcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 295  Q
    |||||||||||||| ||||||||| ||| ||||||||| ||||||| |  | ||||||||||||||||    
T  17736275 tcaatgaaagacttctgaaatatgctggtaacagaaagttcttgacttataggagagtccaccatttt 17736208  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 16722513 - 16722431
Alignment:
Q  213 ccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccaccatttt 295  Q
    ||||| || ||||| |||||||||||||| |||||||||  ||||||| |||| ||||||| |  | ||||||||||||||||    
T  16722513 ccttcttcatttacttcaatgaaagacttctgaaatatgccggaaacataaagttcttgacttataggagagtccaccatttt 16722431  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 333
Target Start/End: Complemental strand, 17718477 - 17718339
Alignment:
Q  196 ccgcagcagcttcagtgccttcctcgtttacgtcaatgaaagacttgtgaaatatgttggaaacagaaaggtcttgaccttcaagagagtccacca-ttt 294  Q
    |||| |||||||  || ||||| |||||||| |||||| ||||||| |||| ||||| ||||||| | |  ||||||| |  | |||||||||||| |||    
T  17718477 ccgctgcagcttttgtaccttcttcgtttacttcaatgcaagacttctgaagtatgtcggaaacaaatatttcttgacttataggagagtccaccatttt 17718378  T
Q  295 tgttaaacctccagaagagaaaggtaaactcactcctaa 333  Q
    ||| ||||||||   ||| ||||||||| ||| ||||||    
T  17718377 tgtcaaacctcccatagaaaaaggtaaagtcaatcctaa 17718339  T

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