View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_3 (Length: 435)
Name: NF9939_low_3
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 38 - 435
Target Start/End: Original strand, 46113036 - 46113432
Alignment:
| Q |
38 |
gttacctgcatccatggatgaaacaatacacacaattaacaaagtaaaaagaaaatgattgatgtgggttgtcattctattttgcacggttgaagaggca |
137 |
Q |
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| T |
46113036 |
gttacctgcatccatggatgaaacaatacacacaattaacaaagtaaaaagaaaatgattgatgcgggttgtcattctattttgcacggttgaagaggca |
46113135 |
T |
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| Q |
138 |
tgtcttactaaatggtatttataatgagtaggaaagttattttagattaaagacatttaagtgaattcaattcattagtnnnnnnnnntaaagtgaattt |
237 |
Q |
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| T |
46113136 |
tgtcttactaaatggtatttataatgagtaggaaagttattttagattaaagacatttaagtgaattcaattcattagtaaaaaaaa-taaagtgaattt |
46113234 |
T |
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| Q |
238 |
aattcattttaatattttgttggaaaaaatagtctttcattgaaagtggtaaaaacgaaatcaactttttaattcattagtctttcattgtaggaaaata |
337 |
Q |
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| T |
46113235 |
aattcattttaatattttgtaggaaaaaatagtctttcattgaaagtggtaaaaacgaaatcaactttttaattcattagtctttcattgtaggaaaata |
46113334 |
T |
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| Q |
338 |
cgctagtatattctatcatattgacctatctacaatctacaatataaacaaatgagatatcttctattctcaagtacatgtggcatggttccagactt |
435 |
Q |
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| T |
46113335 |
cggtagtatattctatcatattgacctatctacaatctacaatataaacaaatgagatatcttctattctcaagtacatgtggcatggttccagactt |
46113432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 46116599 - 46116677
Alignment:
| Q |
357 |
attgacctatctacaatctacaatataaacaaatgagatatcttctattctcaagtacatgtggcatggttccagactt |
435 |
Q |
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| T |
46116599 |
attgacctatctacactctacaatataaacaaatgagatatcttctattctcaagtacatgtggcatggttcgagactt |
46116677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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