View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_4 (Length: 430)
Name: NF9939_low_4
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 33277795 - 33277386
Alignment:
| Q |
1 |
tttttatcaaatagtttggtggagagaatcacacactaagtgtgtagaagtgtggaattccgggtttcaaccctagagatttactctttttgtttgctga |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33277795 |
tttttgtcaaatagtttggtggagagaatcacacactaagtgtgtagaattgtggaattccgggtttcaaccctaaagatttactctttttgtttgctga |
33277696 |
T |
|
| Q |
101 |
atagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33277695 |
atagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatc |
33277596 |
T |
|
| Q |
201 |
agtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccacaattttgacattcacattttatgttacatttttaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33277595 |
agtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccacaattttgacattcacaatttatgttacatttttaatt |
33277496 |
T |
|
| Q |
301 |
taatttgattgttatatgtagtgggaatttcaagtaggtccagttgttggcatctctgctggtgatgaggtttgggttgctcgttaccttttggaaagga |
400 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33277495 |
taatttgattggtatatgtagtgggaatttcaagtaggtccagttgttggcatctctgctggtgatgaggtttgggttgctcgttaccttttggagaggg |
33277396 |
T |
|
| Q |
401 |
tttgtgagct |
410 |
Q |
| |
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|||||||||| |
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| T |
33277395 |
tttgtgagct |
33277386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 29442226 - 29442092
Alignment:
| Q |
93 |
tttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggca |
192 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||| |||||||| || ||||| |||||||| ||||||||||||| || |||||||| |||| |
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| T |
29442226 |
tttgctcaatagggaccatactattgtggtgctggtgctgacaaggcatttggccgtgacattgttgactcacattacaaagcctgtctttatgccggca |
29442127 |
T |
|
| Q |
193 |
ttaacatcagtggtgttaatggagaagttatgcct |
227 |
Q |
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| T |
29442126 |
tcaacatcagtggaatcaatggtgaagtgatgcct |
29442092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 29441961 - 29441882
Alignment:
| Q |
316 |
atgtagtgggaatttcaagtaggtccagttgttggcatctctgctggtgatgaggtttgggttgctcgttaccttttgga |
395 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
29441961 |
atgtagtgggaattccaagttggtccctcagttggcatctctgctggtgatgaaatttgggttgctcgttacattttgga |
29441882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 26249334 - 26249200
Alignment:
| Q |
103 |
agggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatcag |
202 |
Q |
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|||| ||||| |||||||| |||||||||| || || | || ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || |
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| T |
26249334 |
agggcccatattattgtgggattggtgctgataaagcctatggtcgtgacattgttgatgcacattacaaagcttgtctttatgctggcattaacattag |
26249235 |
T |
|
| Q |
203 |
tggtgttaatggagaagttatgcctagccaggtat |
237 |
Q |
| |
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||| | |||||||| ||||||||| | ||||||| |
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| T |
26249234 |
tggcatcaatggagaggttatgcctggtcaggtat |
26249200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 7192841 - 7192763
Alignment:
| Q |
158 |
tgatgcacattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggta |
236 |
Q |
| |
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|||||| |||||||| || || | |||||||| ||||||||||||||| ||||| ||| ||||||||| |||||||| |
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| T |
7192841 |
tgatgctcattacaaggcttgtttatatgctggaattaacatcagtggtactaatgcagaggttatgcctggccaggta |
7192763 |
T |
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