View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_6 (Length: 399)
Name: NF9939_low_6
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 223 - 395
Target Start/End: Complemental strand, 34790375 - 34790203
Alignment:
| Q |
223 |
gaacttctccatacttatgctatgctcatccaaagaattcatcatttttgcatagaaacatttattttcagcatactcttagataagaaaattaatgtgt |
322 |
Q |
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| T |
34790375 |
gaacttctccatacttatgctatgctcatccaaagaattcatcatttttgcatagaaacatttattttcagcatactcttagataaggaaattaatgtgt |
34790276 |
T |
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| Q |
323 |
caattaacttgtaaagaccgaagcttcctcccatgataccttaaaattttggaatagttttcctatgctactc |
395 |
Q |
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| T |
34790275 |
caattaacttgtaaagaccgaagcttcctcccatgataccttaaaattttggaatagttttcctatgcaactc |
34790203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 5572842 - 5572994
Alignment:
| Q |
63 |
attagtgaaagcaagagtataacacagagattttgagtggccatataccagtaaattcaaagataactcttgaattagaacttctgcatactg-ttaagg |
161 |
Q |
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| T |
5572842 |
attagtgaaagcaagagtaaaacataaa--ttttgagtggtcatataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcaggg |
5572939 |
T |
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| Q |
162 |
ctataagtgtgacttgttgggtagaattggggaagaaagtaattgtttatataat |
216 |
Q |
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| T |
5572940 |
ctataaatgtgacttgttgggtagaattggggaagaaagtaattgtttatgtaat |
5572994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 5575915 - 5576025
Alignment:
| Q |
107 |
ataccagtaaattcaaagataactcttgaattagaacttctgcatactgttaagg-ctataagtgtgacttgttgggtagaattggggaagaaagtaatt |
205 |
Q |
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| T |
5575915 |
ataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttgacttgttgggtagaattgaggacgaaagtaatt |
5576014 |
T |
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| Q |
206 |
gtttatataat |
216 |
Q |
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|||||| |||| |
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| T |
5576015 |
gtttatgtaat |
5576025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 5586395 - 5586505
Alignment:
| Q |
107 |
ataccagtaaattcaaagataactcttgaattagaacttctgcatactg-ttaaggctataagtgtgacttgttgggtagaattggggaagaaagtaatt |
205 |
Q |
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||||| ||||||||||||||||||||| ||||||| ||||||| ||||| | | |||||||| |||| |||||||| || |||||||||||||||||||| |
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| T |
5586395 |
atacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagggctataaatgtgtcttgttggatataattggggaagaaagtaatt |
5586494 |
T |
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| Q |
206 |
gtttatataat |
216 |
Q |
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||||| |||| |
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| T |
5586495 |
atttatgtaat |
5586505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 216
Target Start/End: Original strand, 5592621 - 5592731
Alignment:
| Q |
107 |
ataccagtaaattcaaagataactcttgaattagaacttctgcatactg-ttaaggctataagtgtgacttgttgggtagaattggggaagaaagtaatt |
205 |
Q |
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||||| ||||||||||||||||||||| ||||||| |||||||||||| | | |||||||| || |||| | | || |||||||||||||||||||| |
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| T |
5592621 |
atacctgtaaattcaaagataactcttcaattagattttctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaatt |
5592720 |
T |
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| Q |
206 |
gtttatataat |
216 |
Q |
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||||| |||| |
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| T |
5592721 |
atttatgtaat |
5592731 |
T |
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