View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_7 (Length: 379)
Name: NF9939_low_7
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 29661177 - 29660835
Alignment:
| Q |
14 |
aggtggccataatcgttatatattagtacaatgagactctacttaggacttcggatgggaggagagaactttggggaaaatagatagaaaaactcacctt |
113 |
Q |
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| T |
29661177 |
aggtggccataatcgttatatattagtacaatgagactttacttaggacttcgaatgggaggagagaactttgggaaaaatagatagaaaaattcacctt |
29661078 |
T |
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| Q |
114 |
atttgaaagaatgattataattaatatatttctaattcttaaaagtaatatataacgacatagaaatgatttaaacaatttatctaaacctaccaaaaac |
213 |
Q |
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|||| ||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29661077 |
atttaaaagagtgattatgattaatatatttctaatttttaagagtaatatataacgacatagaaatgatttgaacaatttatctaaacctaccaaaaac |
29660978 |
T |
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| Q |
214 |
tctctaatatcatccttaactacatttatatttcatccatattaggaaaaagtaagcccttcattcatgtttggggggctatccttccttctttaactcc |
313 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29660977 |
tctctaa--------ttaactacatttagatttcatccatattaggaaaaagtaagcccttcattcatgtttggggggctatccttccttctttaactcc |
29660886 |
T |
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| Q |
314 |
aaagccccgtttccattctaaactcc-aaacatacccttagtttatgtatc |
363 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29660885 |
aaagccccgtttccattctaaactccaaaacatacccttagtttatgtatc |
29660835 |
T |
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