View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9939_low_9 (Length: 279)
Name: NF9939_low_9
Description: NF9939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9939_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 32158269 - 32158520
Alignment:
| Q |
14 |
acctgtgtaataacattagcattattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggttt |
113 |
Q |
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| T |
32158269 |
acctgtgtaataacattagcattattaactatatttcatcaacaataactaagttcagattcaaacaaaataaactcaccacatagtatttcactggttt |
32158368 |
T |
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| Q |
114 |
ctctgacattggcatattatatgaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagtttttatttcataatatgaacacaacctac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32158369 |
ctctgacattggcatattatatgaacaggtgttagttagtgctatataaaatggaatgtcaaactcaaagttgttatttcataatatgaacacaacctac |
32158468 |
T |
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| Q |
214 |
tccaacatgttccaaagtatatacagacactgatgtagtaatgtttgtcttg |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32158469 |
tccaacatgttccaaagtatatacagacactgatgtagtaatgtttgtcttg |
32158520 |
T |
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