View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9940_high_14 (Length: 250)
Name: NF9940_high_14
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_high_14 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20599892 - 20599653
Alignment:
| Q |
1 |
tccattttcatcatttttcctagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctctt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20599892 |
tccattttcatcatttttcccagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctctt |
20599793 |
T |
|
| Q |
101 |
ccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20599792 |
ccccaattaggagggtaaccatgtttcttataacaagttttcacagtgtgattagttctattacagaaactacacactctgagattccctcttcctcttc |
20599693 |
T |
|
| Q |
201 |
cttgaaaaccatttcctctacctcttccaaattgtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
20599692 |
cttgaaaaccatttcctctacctataccaaattgtctctg |
20599653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 4695605 - 4695767
Alignment:
| Q |
81 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactct |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| ||||||| | || ||||||| |||| ||||| |
|
|
| T |
4695605 |
aagaatttcctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctccatggtgtgatttgaccttccacagaaattacaaactct |
4695704 |
T |
|
| Q |
181 |
gagagtccctcttcctcttccttgaaaac---catttcctctacctcttccaaattgtctctg |
240 |
Q |
| |
|
| | ||||||||||||||||| |||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
4695705 |
tccattgcctcttcctcttccttggaaaccagcatttcctcttcctcttccaaattgcctctg |
4695767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 5154142 - 5154378
Alignment:
| Q |
3 |
cattttcatcatttttcctagtggaagcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttcc |
102 |
Q |
| |
|
|||||||||||||||||| | |||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5154142 |
cattttcatcatttttcccaatggaagtgcttcccttgagctcagtatcttcacattccacaaaattagcattagcaaaagaatttcctcctcctcttcc |
5154241 |
T |
|
| Q |
103 |
ccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactctgagagtccctcttcctcttcct |
202 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||||| ||||||||| |||||||| ||||| ||||| || |||||| | |||||||| ||||| |
|
|
| T |
5154242 |
ccaattaggaggataaccatgtttcttataac-aggttccaaaatgtgattggttctattgcagaagctacataccctgagatttgctcttcctattcct |
5154340 |
T |
|
| Q |
203 |
tgaaaaccatttcctctacctcttccaaattgtctctg |
240 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||| |
|
|
| T |
5154341 |
tgaaatgaatttcctctaccccttccaaattgcctctg |
5154378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 22842012 - 22841851
Alignment:
| Q |
73 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaacta |
172 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||||||||| | ||| || || |
|
|
| T |
22842012 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttcttgtaacaagtttccactgtgtgattagttctttcacaaaaggta |
22841913 |
T |
|
| Q |
173 |
cacactctgagagtccctcttcctcttccttgaaaa---ccatttcctctacctcttccaaa |
231 |
Q |
| |
|
|| | ||| | | |||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
22841912 |
caaaatcttccattacctcttcctcttccttgagaagacccatttcctctacctctgccaaa |
22841851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 50 - 240
Target Start/End: Original strand, 31233520 - 31233710
Alignment:
| Q |
50 |
tcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgt |
149 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||||||| | |||||||||||||| ||||| ||||| || ||| |
|
|
| T |
31233520 |
tcttcacaatccacaaagttagcatttgcaaaagaatttccacctcctctgccccaattaggaagctaaccatgtttcttgtaacatgtttcaactgtgt |
31233619 |
T |
|
| Q |
150 |
gattagttctattacagaaactacacactctgagagtccctcttcctcttccttgaaaaccatttcctctacctcttccaaattgtctctg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | |||| ||||||||||||||| ||||| |||||||||||||||||| ||||| |
|
|
| T |
31233620 |
gattagttctattacagaaactacacactatgggatttcctcctcctcttccttgaaatgaatttcttctacctcttccaaattgcctctg |
31233710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 14233518 - 14233357
Alignment:
| Q |
73 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaacta |
172 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||| ||||| ||||||||||||| | ||| || || |
|
|
| T |
14233518 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttcttgtaacaagtatccactgtgtgattagttctttcacaaaaggta |
14233419 |
T |
|
| Q |
173 |
cacactctgagagtccctcttcctcttccttg---aaaaccatttcctctacctcttccaaa |
231 |
Q |
| |
|
|| | ||| | | ||||||||||||||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
14233418 |
caaaatcttccattacctcttcctcttccttgagaaaacccatttcctctacctctgccaaa |
14233357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 3298 - 3136
Alignment:
| Q |
81 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactct |
180 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| ||||||| | || ||||||| |||| ||||| |
|
|
| T |
3298 |
aagaattacctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctccatggtgtgatttgaccttccacagaaattacaaactct |
3199 |
T |
|
| Q |
181 |
gagagtccctcttcctcttccttgaaaac---catttcctctacctcttccaaattgtctctg |
240 |
Q |
| |
|
| | ||||||||||||||||| |||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
3198 |
tccattgcctcttcctcttccttggaaaccagcatttcctcttcctcttccaaattgcctctg |
3136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 37175416 - 37175328
Alignment:
| Q |
81 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaa |
169 |
Q |
| |
|
|||||||||| ||||||||||||||||| || || |||||||| || |||||||||||||| ||| | ||||| ||||| | ||||||| |
|
|
| T |
37175416 |
aagaatttccacctcctcttccccaatttggtggataaccatgctttttataacaagtttcaacagtatgatttgttctttcacagaaa |
37175328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 23418729 - 23418891
Alignment:
| Q |
81 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttataacaagtttccacaatgtgattagttctattacagaaactacacactct |
180 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| | ||||| |||||||||||||| |||| ||||||| | || ||||||| |||| ||||| |
|
|
| T |
23418729 |
aagaattacctcctcctctaccccaattaggaggaaagccatgcttcttataacaagtctccatggtgtgatttgaccttccacagaaattacaaactct |
23418828 |
T |
|
| Q |
181 |
gagagtccctcttcctcttccttgaaaac---catttcctctacctcttccaaattgtctctg |
240 |
Q |
| |
|
| ||||||||||||||||| |||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
23418829 |
tccgttgcctcttcctcttccttggaaaccagcatttcctcttcctcttccaaattgcctctg |
23418891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University