View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_high_17 (Length: 238)
Name: NF9940_high_17
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20599903 - 20600129
Alignment:
| Q |
1 |
ccaaagatcagtatcagaatttgattgcatttttggagaaaagaaacattgaagctaaaggctctgcaaatgtgatgaaagccag---ctcaactgcaaa |
97 |
Q |
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| T |
20599903 |
ccaaagatcagtatcagaatttgattgcattgttggagaaaagcaacattgaagctaaaggctctgcaaatgtgatgaaggccagtagctcaactgcaaa |
20600002 |
T |
|
| Q |
98 |
tattggaggtaaattcttaac-agtaatgctagttgcaaatttgatgacactagctggatagttgacacaagtgctacacatcacacttgtcatgatttg |
196 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20600003 |
tattggaggtaaattctttaccagtaatgctagttgcaaatttgatgacactagctggatagttgacacaggtgctacacatcacacttgtcatgatttg |
20600102 |
T |
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| Q |
197 |
agttggttcattatttactatgaaatt |
223 |
Q |
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||||||||||||||||||||||||||| |
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| T |
20600103 |
agttggttcattatttactatgaaatt |
20600129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5154129 - 5153903
Alignment:
| Q |
1 |
ccaaagatcagtatcagaatttgattgcatttttggagaaaagaaacattgaagctaaaggctctgcaaatgtgatgaaagccagc---tcaactgcaaa |
97 |
Q |
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||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||| || |
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| T |
5154129 |
ccaaagaccagtatcagaatttgattgcactgttggagaaaagcaacattgaagctaaaggctctgcaaatgtgatgaaggccagcagttcaattgctaa |
5154030 |
T |
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| Q |
98 |
tattggaggtaaattcttaac-agtaatgctagttgcaaatttgatgacactagctggatagttgacacaagtgctacacatcacacttgtcatgatttg |
196 |
Q |
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| T |
5154029 |
tattggaggtaaattctttaccagtaatgctagttgcaaatttgatgacactagctggatagttgacacaggttctacacatcacacttgtgatgatttg |
5153930 |
T |
|
| Q |
197 |
agttggttcattatttactatgaaatt |
223 |
Q |
| |
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|| ||||||| || ||| |||||||| |
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| T |
5153929 |
agctggttcactacttataatgaaatt |
5153903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 31233455 - 31233251
Alignment:
| Q |
6 |
gatcagtatcagaatttgattgcatttttggagaaaagaaacattgaagctaaaggctctgcaaatgtgatgaaagcca---gctcaactgcaaatattg |
102 |
Q |
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||||||||||| |||||||||||||| ||||| | ||| || ||||||||||||| || ||||| ||||||| ||| |||||| || || |||| |
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| T |
31233455 |
gatcagtatcaaaatttgattgcattattggaaagaagcaatgttgaagctaaaggttcagcaaacatgatgaagaccaagagctcaagtgttaacattg |
31233356 |
T |
|
| Q |
103 |
gaggtaaattcttaa-cagtaatgctagttgcaaatttgatgacactagctggatagttgacacaagtgctacacatcacacttgtcatgatttgagttg |
201 |
Q |
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|||||||| |||| | || |||||||| ||||||| ||||||| | ||| ||||| ||||| || |||| ||||| || || ||||||||||| ||||| |
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| T |
31233355 |
gaggtaaactctttatcaataatgctatttgcaaaattgatgatagtagttggattgttgatactggtgcaacacaccatacatgtcatgatttaagttg |
31233256 |
T |
|
| Q |
202 |
gttca |
206 |
Q |
| |
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||||| |
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|
| T |
31233255 |
gttca |
31233251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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