View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_high_19 (Length: 214)
Name: NF9940_high_19
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 49230435 - 49230624
Alignment:
| Q |
8 |
aatgagatggacatcacatcttaacccgaattcttaggacattagatgtataagtcctcttacttaaataatttactcaacactcaaatttctaatcaaa |
107 |
Q |
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| T |
49230435 |
aatgagttgaacatcacatcttaacccgaattcttaggacattagatgtataaatccttttacttaaataatttactcaacactcaaatttctaatcaaa |
49230534 |
T |
|
| Q |
108 |
atgagatttctaactcatattctattgtatcttctacttaagatttcaacacaaaatatccaagataaatagcaacacaggttaattctg |
197 |
Q |
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| T |
49230535 |
ataagatttctaactcatattctattgtatcttctacttaaaatttcaacacaaaatatccaagataaatagcaacacaagttaattctg |
49230624 |
T |
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