View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9940_high_2 (Length: 557)

Name: NF9940_high_2
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9940_high_2
NF9940_high_2
[»] chr2 (23 HSPs)
chr2 (16-540)||(39813850-39814374)
chr2 (274-540)||(39910308-39910574)
chr2 (274-540)||(39926915-39927179)
chr2 (322-540)||(39921627-39921845)
chr2 (278-540)||(39901959-39902221)
chr2 (21-242)||(39910562-39910782)
chr2 (21-242)||(39927167-39927372)
chr2 (323-540)||(39825362-39825579)
chr2 (323-540)||(39805331-39805548)
chr2 (35-205)||(39825657-39825827)
chr2 (35-82)||(39902350-39902397)
chr2 (240-275)||(2841086-2841121)
chr2 (240-275)||(8973315-8973350)
chr2 (240-275)||(8979325-8979360)
chr2 (240-275)||(8984696-8984731)
chr2 (240-275)||(9008024-9008059)
chr2 (240-275)||(9023450-9023485)
chr2 (240-275)||(9026789-9026824)
chr2 (240-275)||(30732011-30732046)
chr2 (240-275)||(30733991-30734026)
chr2 (240-275)||(32918083-32918118)
chr2 (240-275)||(43850052-43850087)
chr2 (241-275)||(19232469-19232503)
[»] chr8 (5 HSPs)
chr8 (240-275)||(37679758-37679793)
chr8 (240-275)||(40054315-40054350)
chr8 (240-275)||(41841221-41841256)
chr8 (240-275)||(44878986-44879021)
chr8 (240-275)||(44880900-44880935)
[»] chr6 (2 HSPs)
chr6 (240-275)||(10791721-10791756)
chr6 (240-275)||(10795959-10795994)
[»] chr5 (3 HSPs)
chr5 (240-275)||(1716521-1716556)
chr5 (240-275)||(3643643-3643678)
chr5 (240-275)||(7524971-7525006)
[»] chr4 (7 HSPs)
chr4 (240-275)||(3461211-3461246)
chr4 (240-275)||(11652461-11652496)
chr4 (240-275)||(26984736-26984771)
chr4 (240-275)||(26998809-26998844)
chr4 (240-275)||(49106598-49106633)
chr4 (240-275)||(49108702-49108737)
chr4 (240-275)||(50077268-50077303)
[»] chr1 (18 HSPs)
chr1 (240-275)||(14652528-14652563)
chr1 (240-275)||(14654409-14654444)
chr1 (240-275)||(14662319-14662354)
chr1 (240-275)||(14664200-14664235)
chr1 (240-275)||(14667180-14667215)
chr1 (240-275)||(14669778-14669813)
chr1 (240-275)||(14674484-14674519)
chr1 (240-275)||(14676635-14676670)
chr1 (240-275)||(14679862-14679897)
chr1 (240-275)||(14681602-14681637)
chr1 (240-275)||(14683753-14683788)
chr1 (240-275)||(14706091-14706126)
chr1 (240-275)||(14708581-14708616)
chr1 (240-275)||(14716294-14716329)
chr1 (240-275)||(28366268-28366303)
chr1 (240-275)||(33988073-33988108)
chr1 (240-275)||(38175599-38175634)
chr1 (240-272)||(37422175-37422207)


Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Complemental strand, 39814374 - 39813850
Alignment:
Q  16 gacatcaacctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattgga 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814374 gacatcaacctcaattgctttacgacaacatcaaaaagaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattgga 39814275  T
Q  116 tttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39814274 tttgaattgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattacaat 39814175  T
Q  216 aacgggattattactacacacaacctacacttgatcatagccaaaaggccgagaaaggtacacacaacctagatccttacaaataaacatatacatagaa 315  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814174 aacgggattatgactacacacaacctacacttgatcatagccaaaaggccgagaaaggtacacacaacctagatccttacaaataaacatatacatagaa 39814075  T
Q  316 tagggtagcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccata 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39814074 tagggtagcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccata 39813975  T
Q  416 actgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcatctccaaat 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39813974 actgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcatctccaaat 39813875  T
Q  516 acagattccaaaagcttcctccaag 540  Q
    |||||||||||||||||||||||||    
T  39813874 acagattccaaaagcttcctccaag 39813850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 274 - 540
Target Start/End: Complemental strand, 39910574 - 39910308
Alignment:
Q  274 tacacacaacctagatccttacaaataaacatatacatagaatagggtagcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaag 373  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39910574 tacacacaacctagatcctaacaaataaacatataaatataataggctagcgtaccggtttgagattgacgtgataaattccaacaccggaacttttaag 39910475  T
Q  374 tggtgaataatcagaaccgtctagagaaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgt 473  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39910474 tggtgaataatcagaaccgtctagagcaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgt 39910375  T
Q  474 gcaaccttgtcctttttcatattttctatttcatctccaaatacagattccaaaagcttcctccaag 540  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||    
T  39910374 gcaaccttgtcctttttaatattttctatttcatttccaaatacagattccaatagcttcctccaag 39910308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 274 - 540
Target Start/End: Complemental strand, 39927179 - 39926915
Alignment:
Q  274 tacacacaacctagatccttacaaataaacatatacatagaatagggtagcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaag 373  Q
    |||||||||||||||||| |||||||||||||| | |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39927179 tacacacaacctagatccgtacaaataaacataaatata--ataggctagcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaag 39927082  T
Q  374 tggtgaataatcagaaccgtctagagaaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgt 473  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39927081 tggtgaataatcagaaccgtccagagcaacactccaaccataactgtttttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgt 39926982  T
Q  474 gcaaccttgtcctttttcatattttctatttcatctccaaatacagattccaaaagcttcctccaag 540  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39926981 gcaacattgtcctttttcatattttctatttcatctccaaatacagattccaatagcttcctccaag 39926915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 322 - 540
Target Start/End: Complemental strand, 39921845 - 39921627
Alignment:
Q  322 agcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccataactgtt 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  39921845 agcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccatctagagcaacactccaaccataactgtt 39921746  T
Q  422 cttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcatctccaaatacagat 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39921745 cttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcacctccaaatacagat 39921646  T
Q  522 tccaaaagcttcctccaag 540  Q
    ||||| |||||||||||||    
T  39921645 tccaatagcttcctccaag 39921627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 278 - 540
Target Start/End: Complemental strand, 39902221 - 39901959
Alignment:
Q  278 cacaacctagatccttacaaataaacatatacatagaatagggtagcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggt 377  Q
    ||||||||| ||| || ||||||||||| ||   | |||||| |||||||||||||| |||||||| || |||||||||| ||| |||||||||||||||    
T  39902221 cacaacctatatcattgcaaataaacatttaacaataataggctagcgtaccggtttaagattgacatggtaaattccaatgccagaacttttaagtggt 39902122  T
Q  378 gaataatcagaaccgtctagagaaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaa 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39902121 gaataatcagaaccgtctagagaaacactccaaccataactgttcttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaa 39902022  T
Q  478 ccttgtcctttttcatattttctatttcatctccaaatacagattccaaaagcttcctccaag 540  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  39902021 ccttgtcctttttcatattttttatttcatctccaaatactgattccaaaagctccctccaag 39901959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39910782 - 39910562
Alignment:
Q  21 caacctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttga 120  Q
    ||||||||||| ||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  39910782 caacctcaatttctttatgacaacatcaaaaacaattatgttgatatccaactcgttgtcaaggacatctatt-gaaagaatattgtgaattggatttga 39910684  T
Q  121 attgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccataacgg 220  Q
    ||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| |||||||    
T  39910683 attgactgcaatgtgactaacacagccagctgtctgccacatctagaccgtctgatattgattgaacgtttaagatctggctgaccggttacaataacgg 39910584  T
Q  221 gattattactacacacaaccta 242  Q
    |||||| |||||||||||||||    
T  39910583 gattataactacacacaaccta 39910562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 21 - 242
Target Start/End: Complemental strand, 39927372 - 39927167
Alignment:
Q  21 caacctcaattgctttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggacatctatttgaaagaatattgcgaattggatttga 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||    
T  39927372 caacctcaattgctttacgacaacatcaaaaacaattatgtttctatccaactggttgtcaaggacatctatttgaaacaatattgcgaactggatttga 39927273  T
Q  121 attgtgtgcaatgtgactaacgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgaccgattaccataacgg 220  Q
    ||||||     |||||||||||||||||| |||||||||||           ||||||||||| ||||||||||||||||| ||||| |||| |||||||    
T  39927272 attgtg-----tgtgactaacgcagccagttgtctgccaca-----------tgatcttgattgaacgtttaagatctggcagaccggttacaataacgg 39927189  T
Q  221 gattattactacacacaaccta 242  Q
    |||||| |||||||||||||||    
T  39927188 gattatgactacacacaaccta 39927167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 323 - 540
Target Start/End: Complemental strand, 39825579 - 39825362
Alignment:
Q  323 gcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccataactgttc 422  Q
    ||||||||||||||||||||| |||||||| |||| |||  ||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||     
T  39825579 gcgtaccggtttgagattgacatgataaatgccaatgccataacttttgagtggagaataatcagaaccgtctagagcaacactccaaccataactattt 39825480  T
Q  423 ttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcatctccaaatacagatt 522  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||| || | ||| ||||| | |||| |||||| ||| ||||  |||||||||||||    
T  39825479 ttgaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgtatttcttattttttatctcattgccaaatacagatt 39825380  T
Q  523 ccaaaagcttcctccaag 540  Q
    |||| |  ||||||||||    
T  39825379 ccaataagttcctccaag 39825362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 323 - 540
Target Start/End: Complemental strand, 39805548 - 39805331
Alignment:
Q  323 gcgtaccggtttgagattgacgtgataaattccaacgccggaacttttaagtggtgaataatcagaaccgtctagagaaacactccaaccataactgttc 422  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||| ||     
T  39805548 gcgtactggtttgagattgacgtgataaatgccaatgccggaacttttgagtggagaatagtcagaaccgtctagagcaacactccaaccataactattt 39805449  T
Q  423 ttgaaatctggttttctgtcatagaggttgcaagagcgaggggatttatgtgcaaccttgtcctttttcatattttctatttcatctccaaatacagatt 522  Q
    | ||||||||||||||| |||||||||||||||||| |||||||||| || | ||| |||||   |||  |||||| ||| ||||  ||||||||||| |    
T  39805448 tggaaatctggttttctatcatagaggttgcaagagtgaggggatttgtgggtaactttgtcgcatttattattttttatctcattgccaaatacagact 39805349  T
Q  523 ccaaaagcttcctccaag 540  Q
    |||| | |||||||||||    
T  39805348 ccaataacttcctccaag 39805331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 39825827 - 39825657
Alignment:
Q  35 ttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaaggac-atctatttgaaagaatattgcgaattggatttgaattgtgtgcaatg 133  Q
    |||||||||||| |||||||||||||||  ||||||||| ||||||| |||| || |||   ||||| |||||||||| ||||||||| ||||||||||     
T  39825827 ttacgacaacataaaaaacaattatgttgttatccaacttgttgtcatggaccatttatca-aaagactattgcgaataggatttgaactgtgtgcaatc 39825729  T
Q  134 tgacta-acgcagccagctgtctgccacatctagaccgtctgatcttgattaaacgtttaagatctggctgac 205  Q
    | |||  ||| || || ||||| ||||||||||||||||||||||  |||| |||||||||||| ||||||||    
T  39825728 taacttcacg-agtcaactgtcagccacatctagaccgtctgatcaagattgaacgtttaagatgtggctgac 39825657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 39902397 - 39902350
Alignment:
Q  35 ttacgacaacatcaaaaacaattatgttcctatccaactcgttgtcaa 82  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||    
T  39902397 ttacgacaacatcaaaaacaattattttgctatccaactcgttgtcaa 39902350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 2841086 - 2841121
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  2841086 ctacacttgatcttagccaaaaggccgagaaaggta 2841121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 8973350 - 8973315
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  8973350 ctacacttgatcttagccaaaaggccgagaaaggta 8973315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 8979360 - 8979325
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  8979360 ctacacttgatcttagccaaaaggccgagaaaggta 8979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 8984731 - 8984696
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  8984731 ctacacttgatcttagccaaaaggccgagaaaggta 8984696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 9008059 - 9008024
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  9008059 ctacacttgatcttagccaaaaggccgagaaaggta 9008024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 9023485 - 9023450
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  9023485 ctacacttgatcttagccaaaaggccgagaaaggta 9023450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 9026824 - 9026789
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  9026824 ctacacttgatcttagccaaaaggccgagaaaggta 9026789  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 30732046 - 30732011
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  30732046 ctacacttgatcttagccaaaaggccgagaaaggta 30732011  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 30734026 - 30733991
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  30734026 ctacacttgatcttagccaaaaggccgagaaaggta 30733991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 32918118 - 32918083
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  32918118 ctacacttgatcttagccaaaaggccgagaaaggta 32918083  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 43850087 - 43850052
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  43850087 ctacacttgatcttagccaaaaggccgagaaaggta 43850052  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 275
Target Start/End: Original strand, 19232469 - 19232503
Alignment:
Q  241 tacacttgatcatagccaaaaggccgagaaaggta 275  Q
    ||||||||||| |||||||||||||||||||||||    
T  19232469 tacacttgatcttagccaaaaggccgagaaaggta 19232503  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 37679793 - 37679758
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  37679793 ctacacttgatcttagccaaaaggccgagaaaggta 37679758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 40054350 - 40054315
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  40054350 ctacacttgatcttagccaaaaggccgagaaaggta 40054315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 41841221 - 41841256
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  41841221 ctacacttgatcttagccaaaaggccgagaaaggta 41841256  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 44879021 - 44878986
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  44879021 ctacacttgatcttagccaaaaggccgagaaaggta 44878986  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 44880900 - 44880935
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  44880900 ctacacttgatcttagccaaaaggccgagaaaggta 44880935  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 10791721 - 10791756
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  10791721 ctacacttgatcttagccaaaaggccgagaaaggta 10791756  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 10795959 - 10795994
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  10795959 ctacacttgatcttagccaaaaggccgagaaaggta 10795994  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 1716521 - 1716556
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  1716521 ctacacttgatcttagccaaaaggccgagaaaggta 1716556  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 3643678 - 3643643
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  3643678 ctacacttgatcttagccaaaaggccgagaaaggta 3643643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 7525006 - 7524971
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  7525006 ctacacttgatcttagccaaaaggccgagaaaggta 7524971  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 3461211 - 3461246
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  3461211 ctacacttgatcttagccaaaaggccgagaaaggta 3461246  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 11652461 - 11652496
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  11652461 ctacacttgatcttagccaaaaggccgagaaaggta 11652496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 26984736 - 26984771
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  26984736 ctacacttgatcttagccaaaaggccgagaaaggta 26984771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 26998809 - 26998844
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  26998809 ctacacttgatcttagccaaaaggccgagaaaggta 26998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 49106598 - 49106633
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  49106598 ctacacttgatcttagccaaaaggccgagaaaggta 49106633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 49108702 - 49108737
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  49108702 ctacacttgatcttagccaaaaggccgagaaaggta 49108737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 50077268 - 50077303
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  50077268 ctacacttgatcttagccaaaaggccgagaaaggta 50077303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14652563 - 14652528
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14652563 ctacacttgatcttagccaaaaggccgagaaaggta 14652528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 14654409 - 14654444
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14654409 ctacacttgatcttagccaaaaggccgagaaaggta 14654444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14662354 - 14662319
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14662354 ctacacttgatcttagccaaaaggccgagaaaggta 14662319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 14664200 - 14664235
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14664200 ctacacttgatcttagccaaaaggccgagaaaggta 14664235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 14667180 - 14667215
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14667180 ctacacttgatcttagccaaaaggccgagaaaggta 14667215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 14669778 - 14669813
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14669778 ctacacttgatcttagccaaaaggccgagaaaggta 14669813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14674519 - 14674484
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14674519 ctacacttgatcttagccaaaaggccgagaaaggta 14674484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14676670 - 14676635
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14676670 ctacacttgatcttagccaaaaggccgagaaaggta 14676635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14679897 - 14679862
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14679897 ctacacttgatcttagccaaaaggccgagaaaggta 14679862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14681637 - 14681602
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14681637 ctacacttgatcttagccaaaaggccgagaaaggta 14681602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14683788 - 14683753
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14683788 ctacacttgatcttagccaaaaggccgagaaaggta 14683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14706126 - 14706091
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14706126 ctacacttgatcttagccaaaaggccgagaaaggta 14706091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14708616 - 14708581
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14708616 ctacacttgatcttagccaaaaggccgagaaaggta 14708581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 14716329 - 14716294
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  14716329 ctacacttgatcttagccaaaaggccgagaaaggta 14716294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 28366268 - 28366303
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  28366268 ctacacttgatcttagccaaaaggccgagaaaggta 28366303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Complemental strand, 33988108 - 33988073
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  33988108 ctacacttgatcttagccaaaaggccgagaaaggta 33988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 38175599 - 38175634
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaaggta 275  Q
    |||||||||||| |||||||||||||||||||||||    
T  38175599 ctacacttgatcttagccaaaaggccgagaaaggta 38175634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 37422207 - 37422175
Alignment:
Q  240 ctacacttgatcatagccaaaaggccgagaaag 272  Q
    |||||||||||| ||||||||||||||||||||    
T  37422207 ctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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