View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9940_high_4 (Length: 445)

Name: NF9940_high_4
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9940_high_4
NF9940_high_4
[»] chr8 (2 HSPs)
chr8 (349-430)||(13403071-13403152)
chr8 (349-430)||(13397491-13397572)
[»] chr5 (1 HSPs)
chr5 (192-229)||(30080435-30080472)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 13403152 - 13403071
Alignment:
Q  349 cttcatagattaacactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13403152 cttcatagattaacactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 13403071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 13397572 - 13397491
Alignment:
Q  349 cttcatagattaacactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 430  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13397572 cttcatagattatcactatctcacattgatcatgtgttaaataaatttaactgcagagaaaaccttacttttgtggaagagg 13397491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 30080435 - 30080472
Alignment:
Q  192 ttgcacagacacttctaattgaaggagtgtctcggtgt 229  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  30080435 ttgcactgacacttctaattgaaggagtgtcccggtgt 30080472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University