View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_high_5 (Length: 441)
Name: NF9940_high_5
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Complemental strand, 1022171 - 1021749
Alignment:
| Q |
1 |
ctccgataaccgatctccggccaccgccgctttctcaaaattatctcttatcacttcaacaatctctttcaaatccttatgcttcatcttcaccttttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1022171 |
ctccgataaccgatctccggccaccgccgctttctcaaaattatctcttatcacttcaacaatctctttcaaatccttatgcttcatcttcaccttttcc |
1022072 |
T |
|
| Q |
101 |
acattcacctcctcgtcttttctcacaggatcctcaacgccggcaacaaactccggtgatttttccgatgacttcaaaccggcgataacttcatctctat |
200 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1022071 |
acattcacctcctcgtcttttctcaccggaacctcaacgccggcaacaaactccggtgatttttccgatgacttcaaaccggcgataacttcatctctat |
1021972 |
T |
|
| Q |
201 |
ctgatgagcttgttgaaccataacaatcctcccaatcactacaccgaacctcctcacgttccgtttccaaacgatctagttcttgttccgtttcagtctt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021971 |
ctgatgagcttgttgaacgataacaatcctcccaatcactacaccgaacctcctcacgttccgtttccaaacgatctagttcttgttccgtttcagtctt |
1021872 |
T |
|
| Q |
301 |
gtgattctgaagatgaattttcgagtggaacatgttgtagaacgattctgatgatgtatcggattctggattttccagtttgtgattcggcggttgagaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1021871 |
gtgattctgaagatgaattttcgagtggaacatgttgtagaacgattctgatgatgtatcggattctggattttccagtttgtgattcggcggttgagaa |
1021772 |
T |
|
| Q |
401 |
cgttgccggaaatattcggagtt |
423 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
1021771 |
cgttgccggaaatattcggagtt |
1021749 |
T |
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