View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_high_6 (Length: 439)
Name: NF9940_high_6
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 6986314 - 6985904
Alignment:
| Q |
18 |
gtttccaagtatacagttagtgagttgac---------caccttactaacacgaaaaaagaatcatagaagcaaaattgattaaatgcattgttgaggat |
108 |
Q |
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| T |
6986314 |
gtttccaagcatacagttagtgagttgacgccagtaaacaccttactaacacgaaaaaagaatcatagaagcaaaattgat-----gcattgttgaggat |
6986220 |
T |
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| Q |
109 |
cttactgatatatttttcttgaaccaatacaggtcgtacagatactaagaggtgaagaagagagtatgagaattttgaaagagaggcagaaatcgaaact |
208 |
Q |
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| T |
6986219 |
cttactaatatatttttcttgaaccaatacaggtcgtacagatactaagaggtgaagaagagagtttgagaattttgaaagagaggcagaaatcgaaact |
6986120 |
T |
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| Q |
209 |
tcataggacgtactcagaagaactatatgctgcagaagattacaactcaacgaagtttttgagcgacagggatcgatatatggagacaattttaggcccc |
308 |
Q |
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| T |
6986119 |
tcataggacgtactcagaagaactatatgctgcagaagattacaactcaacgaagtttttgagcgacagggatcgatatatggagacgattttaggcccc |
6986020 |
T |
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| Q |
309 |
agcaatccaaattagattatggtttgtgattgattcagatacatagaactacaaaagtttacattaaaggaagtgatgtatatgaatatgagctgattcc |
408 |
Q |
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| T |
6986019 |
agcaatccaaattagattatggtttgtgattgattcagatgcatagaactacaaaagtttacattaaaggaagtgatgtacatgaatatgagctgattcc |
6985920 |
T |
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| Q |
409 |
acttgtggatttagtg |
424 |
Q |
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| T |
6985919 |
acttgtggatttagtg |
6985904 |
T |
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