View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_1 (Length: 564)
Name: NF9940_low_1
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 83 - 553
Target Start/End: Original strand, 10905641 - 10906121
Alignment:
| Q |
83 |
aggatcatttgccaaagttaggagatgtgttagagacattgtatgagggtaacagtgcggnnnnnnnnnnnnnnnnnnnttgttctttgcttaatctcaa |
182 |
Q |
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| T |
10905641 |
aggatcatttgccaaagttaggagatgtgttagagacattgtatgagggtaacagtgcggaaaaaaaaaaaaaa-----ttgttctttgcttaatctcaa |
10905735 |
T |
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| Q |
183 |
aatcacgttgtcattagaatcaactttttatgcaacagaaacagtgcattccttatgagcagacttcttgaatataaaccttggaggaaaaccatgcttg |
282 |
Q |
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| T |
10905736 |
aatcacgttatcattagaatcaactttttatgcaacagaaacagtgcattccttatgagcagacttcttgaatataaaccttggaggaaaaccatgcttg |
10905835 |
T |
|
| Q |
283 |
aagtagcatgtgtcaactgtcaagatcacggttggtgccattacaatgtgttcatgtt---------------ttgtctcgcaagaaacgacttgaaatt |
367 |
Q |
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| T |
10905836 |
aagtagcatgtgtcaactgtcaagatcacggttggtgccattacaatgtgttcatgtttaaaagacccttagcttgtctcgcaagaaacgacttgaaatt |
10905935 |
T |
|
| Q |
368 |
gggcttgatgtgacatgaaagtcttgcttgccttgnnnnnnnnnnnnnnnnggattaccatgttataggtacggagtttccatcaccgtttaatgatgac |
467 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10905936 |
gggcttgacgtgacatgaaagtcttgcttgccttgttttttgttttgttttggattaccatgttataggtacggagtttccatcaccgtttaatgatgac |
10906035 |
T |
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| Q |
468 |
taatctccatcggaaaataacccttgctgtttaaatagcaagagtggtgagttcatatatgatacgatcacatattcaattgatgt |
553 |
Q |
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| T |
10906036 |
taatctccgtcggaaaataacccttgctgtataaatagcaagagtggtgagttcatatatgatacgatcacatattcaattgatgt |
10906121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 298
Target Start/End: Original strand, 10860704 - 10860809
Alignment:
| Q |
193 |
tcattagaatcaactttttatgcaacagaaacagtgcattccttatgagcagacttcttgaatataaaccttggaggaaaaccatgcttgaagtagcatg |
292 |
Q |
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|||| ||||||||||| || ||||| |||| |||||||| | || ||| || | |||| || || ||||||||||||||||||||||||||||||||| |
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| T |
10860704 |
tcatcagaatcaacttcttgtgcaatagaatcagtgcatacactacgagaagcatccttgtatctataccttggaggaaaaccatgcttgaagtagcatg |
10860803 |
T |
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| Q |
293 |
tgtcaa |
298 |
Q |
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| |||| |
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| T |
10860804 |
tatcaa |
10860809 |
T |
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