View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_10 (Length: 383)
Name: NF9940_low_10
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 380
Target Start/End: Original strand, 39674430 - 39674794
Alignment:
| Q |
16 |
tcaaactgcaacaaagcatccagcaactactttaccatgagattaatccacctgtattttaaactcatggttgaagtactattgcttgaactttcattca |
115 |
Q |
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| T |
39674430 |
tcaaactgcaacaaagcatccaacaactactttctcatgagattaatccacctgcattttcaactcatggttgaagtactattgcttgaactttcattca |
39674529 |
T |
|
| Q |
116 |
ccaaaggagcaacacccatttgaatatgaaagcagcacaatggaaccaaatccatcatcgctggcttattcacgagaaattttcttggggcttctgttaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
39674530 |
ccaaaggagcaacacccatttgaatatgaaagcagcacaatggaaccaaatccatcattgctggcttattcacgagaaattttcttggggcttctgttca |
39674629 |
T |
|
| Q |
216 |
agctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttctgaatattcctgtgaggattctaacattgtgtgtgtagctaaatcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39674630 |
agctaatccaccgatattatagtgattgatcaaatcacccattaaaagtgcttctgaatattcctgtgaggattctaacattgtgtgtgtagctaaatcc |
39674729 |
T |
|
| Q |
316 |
ctttgagattgaggcaatggcattatcattggtgatctttcctttcttctttagaagagattcat |
380 |
Q |
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| T |
39674730 |
ctttgagattgagacaatggcattatcgttggtgatctttcctttcttctttagaagagattcat |
39674794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 19968507 - 19968417
Alignment:
| Q |
180 |
cttattcacgagaaattttcttggggcttctgttaaagctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttct |
270 |
Q |
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| T |
19968507 |
cttattcgcgagaaattttcttgaagcttttgttaaaactatacaaccaatattatagtgataattcaaatcactcattagaagtgcttct |
19968417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 34626172 - 34626301
Alignment:
| Q |
181 |
ttattcacgagaaattttcttggggcttctgttaaagctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttctgaatattcct |
280 |
Q |
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||||||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| | |||||| || || | |
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| T |
34626172 |
ttattcataagaaatattcttgaagcttctgttaaagctaatccaccaatattatagtgattaatcaaatcactcattagaagggattctgagtagtcat |
34626271 |
T |
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| Q |
281 |
gtgaggattctaacattgtgtgtgtagcta |
310 |
Q |
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| T |
34626272 |
gtgaggattctagcattgtgtgtgtagcta |
34626301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 34625940 - 34625986
Alignment:
| Q |
78 |
actcatggttgaagtactattgcttgaactttcattcaccaaaggag |
124 |
Q |
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| T |
34625940 |
actcatggttgaagtactattgcttgaactttcattcaccaaaggag |
34625986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 40037525 - 40037588
Alignment:
| Q |
209 |
ctgttaaagctaatccaccgatattatagtgattgatcaaatcactcattaaaagtgcttctga |
272 |
Q |
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| T |
40037525 |
ctgttaaagctaaaccaccaatattatagtgataattcaaatcgctcattagaaatgcttctga |
40037588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 51044923 - 51044880
Alignment:
| Q |
254 |
tcattaaaagtgcttctgaatattcctgtgaggattctaacatt |
297 |
Q |
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| T |
51044923 |
tcattagaagtgcttctgaatattcatgtgaggattctagcatt |
51044880 |
T |
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