View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_11 (Length: 379)
Name: NF9940_low_11
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 38 - 295
Target Start/End: Complemental strand, 49159429 - 49159176
Alignment:
| Q |
38 |
taaccattatataaatctcataaatccacatggataaa-acattattttttaaatggcaatgcctatttgaatatcatattcatccgataataaaatgag |
136 |
Q |
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| T |
49159429 |
taaccattatataaatctcataaatccacatggataaggacattattttttaaatggcaatgcctatttgaatatcatattcatccaataataaaatgag |
49159330 |
T |
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| Q |
137 |
tgttgaaagaaaatgtctgaacggacagaataatagacttttggtatttatgattttgggccaaacgggcttggatgataagatgaagatttgagcaaga |
236 |
Q |
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| T |
49159329 |
cgttaaaagaaagtgtc-----ggactaaacaatgggtctttggtatttatgattttgggccaaacgggcttggatgataagatgaagatttgagcaaga |
49159235 |
T |
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| Q |
237 |
attctgctctttatccaacaagaaatgctcattcttaactgaaataactataattcccc |
295 |
Q |
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| T |
49159234 |
attctgctctttatccaacaaaaaatgctaattcccaactgaaatgactataattcccc |
49159176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 49159124 - 49159085
Alignment:
| Q |
327 |
agggatatttttggaatttcagtttggaatgagcaaaatg |
366 |
Q |
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| T |
49159124 |
aggggtatttttggaattttagtttggaatgagcaaaatg |
49159085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 14044010 - 14043970
Alignment:
| Q |
326 |
tagggatatttttggaatttcagtttggaatgagcaaaatg |
366 |
Q |
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| T |
14044010 |
tagggacattttaggaatttcagttgggaatgagcaaaatg |
14043970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 34608775 - 34608814
Alignment:
| Q |
327 |
agggatatttttggaatttcagtttggaatgagcaaaatg |
366 |
Q |
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| T |
34608775 |
agggatatttttggaatttcagttgggaataagcaaaatg |
34608814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 26227873 - 26227813
Alignment:
| Q |
235 |
gaattctgctctttatccaacaagaaatgctcattcttaactgaaataactataattcccc |
295 |
Q |
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|||| |||||||||| ||||||| |||||||||||| |||||||| |||||||| |||| |
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| T |
26227873 |
gaatcctgctctttacccaacaaaaaatgctcattccgaactgaaaatactataatacccc |
26227813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 16984393 - 16984345
Alignment:
| Q |
318 |
aactcagatagggatatttttggaatttcagtttggaatgagcaaaatg |
366 |
Q |
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|||||| | ||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
16984393 |
aactcacacagggataattttggaattttagttgggaatgagcaaaatg |
16984345 |
T |
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