View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_12 (Length: 362)
Name: NF9940_low_12
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 5280388 - 5280647
Alignment:
| Q |
17 |
agcatcttgtatattgttaaaatccgatcaaatgtgtgatgtaacagtcgatatgtttttcttgtggccaataatagtagttagnnnnnnnn-aaagaat |
115 |
Q |
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| T |
5280388 |
agcaccttgtaaattgttaaaatccgatcaaatgtg--atgtaacagtcgatatgtttttcttgtggccaataatagtagttagtttttttttaaagaat |
5280485 |
T |
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| Q |
116 |
aatagttagttgatatgtctaattttggaccaaacgcttgatagattattgtttaatatttaattcaggggccctttaatttattattcaattattttaa |
215 |
Q |
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| T |
5280486 |
aatagttagttgatatgtctaattttggaccaa--gcttaatagattattgtttaatatt-aattcaggggccctttaatttattattcaattattttaa |
5280582 |
T |
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| Q |
216 |
actaatcgattttgattgaaagcaaaat-acttaaaagnnnnnnngaataagcactatgcagtaa |
279 |
Q |
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| T |
5280583 |
actaatcgattttgattgaaagcaaaataacttaaaagaaaaaaagaataagcactatgcagtaa |
5280647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 5280658 - 5280690
Alignment:
| Q |
308 |
taatttatacatcttataatattatttatcatt |
340 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
5280658 |
taatttgtacatcttataatattatttatcatt |
5280690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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