View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_13 (Length: 321)
Name: NF9940_low_13
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 13673533 - 13673230
Alignment:
| Q |
1 |
ctgtcttctcatccacaacaccatgcataaagtactctggagccaaatacctacaaacagacattgatacatccaatgtcttagaaaatggttataatga |
100 |
Q |
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| T |
13673533 |
ctgtcttctcatccacaacaccatgcataaagtactctggagccaaatacctacaaacagacattgatacatccaatgtcttagaaaatggttataatga |
13673434 |
T |
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| Q |
101 |
gnnnnnnn-tacacaaaagtaaaagtagatgcaatactaacccaaatgtgccttctataggaaaaacatcgtggtgtgcccaattatttggaagccactt |
199 |
Q |
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| T |
13673433 |
gaaaaaaaatatactagagtaaaagtagatgcaatactaacccaaatgtgccttctataggaaaaacaacgtggtgtgcccaattatttggaagccactt |
13673334 |
T |
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| Q |
200 |
tgccagtccaaaatctgatatctgaagtttgatgcataagaaaattagaaatgtatatcatactaaggttctatagatgcagttaataactagcatttgt |
299 |
Q |
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| T |
13673333 |
tgccagtccaaaatctgatatctgaagtttgatgcataagaaaattagaaatgtatatcatactaaggttctatagatacagttaataactaacatttgt |
13673234 |
T |
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| Q |
300 |
catt |
303 |
Q |
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|||| |
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| T |
13673233 |
catt |
13673230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 28532509 - 28532460
Alignment:
| Q |
3 |
gtcttctcatccacaacaccatgcataaagtactctggagccaaatacct |
52 |
Q |
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| T |
28532509 |
gtcttctcatccacaagtccatgcatgaaatactctggagccaaatacct |
28532460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 28532370 - 28532280
Alignment:
| Q |
138 |
aacccaaatgtgccttctataggaaaaacatcgtggtgtgcccaattatttggaagccactttgccagtccaaaatctgatatctgaagtt |
228 |
Q |
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| T |
28532370 |
aacccgaatgtgccttctattgggaatacaacatggtgcgcccatttatccggaagccacttagctaatccaaaatctgaaatctgcagtt |
28532280 |
T |
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