View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9940_low_14 (Length: 314)

Name: NF9940_low_14
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9940_low_14
NF9940_low_14
[»] chr8 (5 HSPs)
chr8 (17-297)||(25390793-25391079)
chr8 (9-294)||(25494041-25494326)
chr8 (9-297)||(25357739-25358037)
chr8 (11-294)||(25677092-25677378)
chr8 (12-182)||(25663822-25664001)
[»] scaffold0466 (1 HSPs)
scaffold0466 (94-184)||(8550-8640)
[»] scaffold1041 (1 HSPs)
scaffold1041 (9-92)||(1256-1339)
[»] chr5 (1 HSPs)
chr5 (203-238)||(27494300-27494335)
[»] chr1 (1 HSPs)
chr1 (203-238)||(5210442-5210477)
[»] chr7 (2 HSPs)
chr7 (239-293)||(13384049-13384103)
chr7 (203-237)||(48706145-48706179)
[»] chr4 (4 HSPs)
chr4 (203-237)||(346310-346344)
chr4 (239-293)||(10090924-10090978)
chr4 (239-293)||(10091704-10091758)
chr4 (199-236)||(20518290-20518327)
[»] chr2 (1 HSPs)
chr2 (203-237)||(33833725-33833759)
[»] chr3 (1 HSPs)
chr3 (128-184)||(4523706-4523762)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 25390793 - 25391079
Alignment:
Q  17 cattatttcatgatcgatgatgaatattgtcagaagcattgtggctaatnnnnnnngacttattttttcaccctatt----tatttatttatggcgtgtc 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||    ||||||||||||||||| |    
T  25390793 cattatttcatgatcgatgatgaatattgtcggaagcattgtggctaataaaaaaagacttattttttcaccctatttatttatttatttatggcgtgac 25390892  T
Q  113 ctattgtttttgacgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtttttaggtgg---nnnnnnnggaatttttca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||          |||||||||||    
T  25390893 ctattgtttttgacgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctg-ttttaggtggaaaaaaaaaaggaatttttca 25390991  T
Q  210 ccaatttggattttaaaatccgaacaccttgcatatcctctccattttcatagacaattgagatctcaagtttattgcatatgaactt 297  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25390992 tcaatttggattttaaaatccgaacaccttgcagatcctctccattttcatagacaattgagatctcaagtttattgcatatgaactt 25391079  T

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Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 294
Target Start/End: Original strand, 25494041 - 25494326
Alignment:
Q  9 acgttgggcattatttcatgatcgatgatgaatattgtcagaagcattgtggctaatnnnnnnngacttattttttcaccctatttatttatttatggcg 108  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||| |    
T  25494041 acgttgggcattatttcatgatcgatgatgaatattgtcggaagcattgtggctaataaaaaaagacttattttttcaccctatttatttatttatggtg 25494140  T
Q  109 tgtcctattgtttttgacgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtttttaggt-ggnnnnnnnggaattttt 207  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |         ||||||||    
T  25494141 tgtcctattgtttttgatgaaaatttcaatgtgatttttagattctataatatgaaatgagttttccccctg-ttctaggtagaaaaaaaatgaattttt 25494239  T
Q  208 caccaatttggattttaaaatccgaacaccttgcatatcctctccattttcatagacaattgagatctcaagtttattgcatatgaa 294  Q
    || ||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25494240 catcaatttggattttaaaatctgaacaccttgcagatcctctccattttcatagaaaattgagatctcaagtttattgcatatgaa 25494326  T

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Target: chr8; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 25357739 - 25358037
Alignment:
Q  9 acgttgggcattatttcatgatcgatgatgaatattgtcagaagcattgtggctaatnnnnnnngacttattttttcaccctatt--------tatttat 100  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||        |||||||    
T  25357739 acgttgagcattatttcatgatcgatgatgaatattgtcggaagcattgtggctaataaaaaaagacttattttttcaccctatttatttatttatttat 25357838  T
Q  101 ttatggcgtgtcctattgtttttgacgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtttttaggtgg-nnnnnnng 199  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        |    
T  25357839 ttatggcgtgtcctattgtttttgatgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtatttaggtggaaaaaaaag 25357938  T
Q  200 gaatttttcaccaatttggattttaaaatccgaacaccttgcatatcctct-ccattttcatagacaattgagatctcaagtttattgcatatgaactt 297  Q
    || ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25357939 gattttttcaccaatttgaattttaaaatccgaacaccttgcagatcctctcccattttcatagacaattgagatctcaagtttattgcatatgaactt 25358037  T

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Target: chr8; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 25677092 - 25677378
Alignment:
Q  11 gttgggcattatttcatgatcgatgatgaatattgtcagaagcattgtggctaatnnnnnnngactta-ttttttcaccctatttatttatttatggcgt 109  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||| || |||||||||||||||||||||||||||||||    
T  25677092 gttgggcattatttcatgatcgatgatgaatattgtcggaagcattgtggctaataaaaaaagacatatttttttcaccctatttatttatttatggcgt 25677191  T
Q  110 gtcctattgtttttgacgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtttttaggtgg--nnnnnnnggaattttt 207  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||  || ||||| |          ||||||||    
T  25677192 gtcctattatttttgacgaaaatttcaatgtgatttttagattctataatatgaaatgagtttttccccttgttctaggtagaaaaaaaaatgaattttt 25677291  T
Q  208 caccaatttggattttaaaatccgaacaccttgcatatcctctccattttcatagacaattgagatctcaagtttattgcatatgaa 294  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  25677292 catcaatttggattttaaaatccgaacaccttgcagatcctctccatttacatagaaaattgagatctcaagtttattgcatatgaa 25677378  T

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Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 25663822 - 25664001
Alignment:
Q  12 ttgggcattatttcatgatcgatgatgaatattgtcagaagcattgtggctaatnnnnnnngacttatttttt-caccctatt--------tatttattt 102  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||       |||||||||||| |||||||||        |||||||||    
T  25663822 ttgggcattatttcatgatcgatgatgaatattatcggaagcattgtggctaataaaaaaagacttatttttttcaccctatttatttatttatttattt 25663921  T
Q  103 atggcgtgtcctattgtttttgacgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtt 182  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||    
T  25663922 atggcgtgtcctattgtttttgacgaaaatgtcaatgtgattttcagattctataatatgaaatgagttttcccgctgtt 25664001  T

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Target: scaffold0466 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 184
Target Start/End: Original strand, 8550 - 8640
Alignment:
Q  94 tatttatttatggcgtgtcctattgtttttgacgaaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtttt 184  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  8550 tatttatttatggcggctcctattgtttttgacgaaaatgtcaatgtgattttcagattcgataatatgaaatgagttttcccactgtttt 8640  T

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Target: scaffold1041 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 1339 - 1256
Alignment:
Q  9 acgttgggcattatttcatgatcgatgatgaatattgtcagaagcattgtggctaatnnnnnnngacttattttttcaccctat 92  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||    
T  1339 acgttggacattatttcatgatcgatgatgaatattgtcggaagcattgtggctaataaaaaaagacttattttttcaccctat 1256  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 27494335 - 27494300
Alignment:
Q  203 tttttcaccaatttggattttaaaatccgaacacct 238  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27494335 tttttcaccaatttggattttaaaatccgaaaacct 27494300  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 5210477 - 5210442
Alignment:
Q  203 tttttcaccaatttggattttaaaatccgaacacct 238  Q
    ||||||||||||||||||||||||||||||| ||||    
T  5210477 tttttcaccaatttggattttaaaatccgaaaacct 5210442  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 13384103 - 13384049
Alignment:
Q  239 tgcatatcctctccattttcatagacaattgagatctcaagtttattgcatatga 293  Q
    |||| |||||||| |||| | |||| ||||||||| |||||||||||||||||||    
T  13384103 tgcagatcctctcaatttccttagaaaattgagatatcaagtttattgcatatga 13384049  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 48706179 - 48706145
Alignment:
Q  203 tttttcaccaatttggattttaaaatccgaacacc 237  Q
    |||||||||||||||||||||| ||||||||||||    
T  48706179 tttttcaccaatttggattttataatccgaacacc 48706145  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 346344 - 346310
Alignment:
Q  203 tttttcaccaatttggattttaaaatccgaacacc 237  Q
    |||||||||||||||||||||| ||||||||||||    
T  346344 tttttcaccaatttggattttataatccgaacacc 346310  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 10090924 - 10090978
Alignment:
Q  239 tgcatatcctctccattttcatagacaattgagatctcaagtttattgcatatga 293  Q
    |||| ||||||||||||| | |||| | |||||||||||||||| ||||||||||    
T  10090924 tgcagatcctctccatttccttagaaacttgagatctcaagttttttgcatatga 10090978  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 10091758 - 10091704
Alignment:
Q  239 tgcatatcctctccattttcatagacaattgagatctcaagtttattgcatatga 293  Q
    |||| ||||||||||||| | |||| | |||||||||||||||| ||||||||||    
T  10091758 tgcagatcctctccatttccttagaaacttgagatctcaagtttgttgcatatga 10091704  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 20518327 - 20518290
Alignment:
Q  199 ggaatttttcaccaatttggattttaaaatccgaacac 236  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  20518327 ggaattttttaccaatttggattttataatccgaacac 20518290  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 237
Target Start/End: Original strand, 33833725 - 33833759
Alignment:
Q  203 tttttcaccaatttggattttaaaatccgaacacc 237  Q
    |||||||||||||||||||||| ||||||||||||    
T  33833725 tttttcaccaatttggattttataatccgaacacc 33833759  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 4523706 - 4523762
Alignment:
Q  128 aaaatttcaatgtgatttttagattccataatatgaaatgagttttccccctgtttt 184  Q
    ||||| || ||| ||||||  ||||| ||||| ||||||||||||||||||||||||    
T  4523706 aaaatgtccatgagattttcggattctataatttgaaatgagttttccccctgtttt 4523762  T

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