View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9940_low_15 (Length: 297)

Name: NF9940_low_15
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9940_low_15
NF9940_low_15
[»] chr4 (6 HSPs)
chr4 (5-286)||(6020418-6020699)
chr4 (11-237)||(26070742-26070967)
chr4 (16-197)||(48804142-48804321)
chr4 (17-128)||(42912510-42912619)
chr4 (33-228)||(51702150-51702342)
chr4 (172-250)||(42912426-42912504)
[»] chr1 (2 HSPs)
chr1 (19-232)||(24886629-24886838)
chr1 (71-139)||(27292234-27292303)
[»] chr2 (2 HSPs)
chr2 (19-232)||(20262616-20262825)
chr2 (11-231)||(28771921-28772136)
[»] chr7 (1 HSPs)
chr7 (5-203)||(26285910-26286104)
[»] chr3 (2 HSPs)
chr3 (11-234)||(51925735-51925956)
chr3 (141-242)||(28690213-28690314)
[»] chr8 (1 HSPs)
chr8 (14-238)||(26130118-26130342)
[»] chr5 (2 HSPs)
chr5 (19-231)||(12658521-12658729)
chr5 (74-137)||(25640394-25640458)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 5 - 286
Target Start/End: Complemental strand, 6020699 - 6020418
Alignment:
Q  5 gagaagcacagactcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaa 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6020699 gagaatcacagactcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactatggatagtccagcaa 6020600  T
Q  105 acccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaac 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6020599 acccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaac 6020500  T
Q  205 gttcgaaggtccaaaagctccctaaaaaacatcaacaaaccataaacaccctttcggatcaaaccaatcagagtgatgtcca 286  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  6020499 gttccaaggtccaaaagctccctaaaaaacatcaacaaaccataaacgccctttcggaccaaaccaatcagagtgaagtcca 6020418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 26070967 - 26070742
Alignment:
Q  11 cacagactcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccac 110  Q
    |||||||||||||||||| ||  ||||||| ||||||||||| ||||||| |||| || |||||||||||||||||||||||||||  |||| |||||||    
T  26070967 cacagactcaaaccctaacgggggatacaacaaatcagtacacaagtggtaaagaaaacaactctaaacaacactactacggatagcgcagcgaacccac 26070868  T
Q  111 gtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtat--ccaagtaggtgtatgaatcgtctaccaacatagaaacgttc 208  Q
     ||||||| |||| ||||  |||||||   || | |||||||||||||| | |||||    | |||||  | |||||||||  |||||| |||||||  |    
T  26070867 atgtggatacgaagccgaaatgcaaaa---aagacgcagagtgaatgttcaaagtattataaggtaggcatttgaatcgtccgccaacacagaaacgacc 26070771  T
Q  209 gaaggtccaaaagctccctaaaaaacatc 237  Q
     ||||||||| | ||||||||||||||||    
T  26070770 caaggtccaacaactccctaaaaaacatc 26070742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 48804321 - 48804142
Alignment:
Q  16 actcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtg 115  Q
    ||||||||||||| || |||||||| |||  |||||| ||||||   | | || || | ||||||||||||||||||| || ||||| ||||||||||||    
T  48804321 actcaaaccctaaagggtgatacaacaaaatagtacacaagtggaagaaaaaacaattataaacaacactactacggacagcccagcgaacccacgtgtg 48804222  T
Q  116 gatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaaca 197  Q
    ||| |||||||||  ||||||||  |||||||||||||| || |||||||||| | ||||| ||||||||||||| ||||||    
T  48804221 gatacgaaaccgaactgcaaaaa--aaaatgcagagtgagtggttagagtatcaaggtaggcgtatgaatcgtctgccaaca 48804142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 42912619 - 42912510
Alignment:
Q  17 ctcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtgg 116  Q
    |||||||||||| || | |||||| |||| ||||||  |||||| |||| || |||||||||||||||||| ||||| | |||||| || ||||||||||    
T  42912619 ctcaaaccctaacgggttatacaacaaattagtaca--agtggtaaagaaaacaactctaaacaacactaccacggacaatccagcgaatccacgtgtgg 42912522  T
Q  117 atgcgaaaccga 128  Q
    ||||||||||||    
T  42912521 atgcgaaaccga 42912510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 51702342 - 51702150
Alignment:
Q  33 tgatacaataaatcagtacataagtggttaa--gacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggatgcgaaaccgact 130  Q
    |||||||  ||||||||||| ||||||| ||  || || |||||||||||||||| | ||||  | |||||| ||||||||| ||||| ||||||||| |    
T  51702342 tgatacatcaaatcagtacacaagtggtgaatagaaaacaactctaaacaacacttccacgggcaatccagcgaacccacgtatggattcgaaaccgaat 51702243  T
Q  131 tgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctcccta 228  Q
    | ||||||| || ||  ||||||||||||  |||||| |||||  | ||||||||||||| |||| | ||||||| || ||||||||  |||||||||    
T  51702242 tacaaaaaaaaacat--agagtgaatgttccgagtat-caagt--gcgtatgaatcgtctgccaaaacagaaacgatccaaggtccagcagctcccta 51702150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 42912504 - 42912426
Alignment:
Q  172 gtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaacaaaccataaa 250  Q
    ||||||||||||||||||| | |||| |||| || || ||||||||| |||||||| |||||||||| ||| |||||||    
T  42912504 gtaggtgtatgaatcgtctgctaacacagaagcgatccaaggtccaacagctccctgaaaaacatcagcaagccataaa 42912426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 24886838 - 24886629
Alignment:
Q  19 caaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggat 118  Q
    |||||||||| ||||||||||| ||||||| ||| ||| ||| |||| || ||||||||||||||||||||| || || ||||| ||||||||| |||||    
T  24886838 caaaccctaacggatgatacaacaaatcagaacacaagcggtaaagaaaacaactctaaacaacactactacagacagcccagcgaacccacgtatggat 24886739  T
Q  119 gcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaa 218  Q
     |||||||||  ||||||    |||| ||| |||||| |||||||||||  | |||||  ||||||||||||||||||| ||||||| |  |||||||||    
T  24886738 acgaaaccgaactgcaaa----aaaacgcatagtgaaagtttagagtattaaggtaggaatatgaatcgtctaccaacacagaaacgattcaaggtccaa 24886643  T
Q  219 aagctccctaaaaa 232  Q
     |||||| ||||||    
T  24886642 cagctccataaaaa 24886629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 27292234 - 27292303
Alignment:
Q  71 actctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaaaa 139  Q
    ||||||||||| |||||| ||||| |  |||||||||||||||||||   ||||||||| ||||||||||    
T  27292234 actctaaacaatcactaccacggacaaaccagcaaacccacgtgtgggcacgaaaccgaattgcaaaaaa 27292303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 20262616 - 20262825
Alignment:
Q  19 caaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtggat 118  Q
    |||||||||| |  |||||||| ||||||| | | ||||||| |||| || |||||||||||||| ||||||||| |  ||||| ||||||||| |||||    
T  20262616 caaaccctaacgagtgatacaacaaatcagaatacaagtggtaaagaaaacaactctaaacaacaatactacggacaacccagcgaacccacgtatggat 20262715  T
Q  119 gcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaa 218  Q
     |||||  ||  ||||||    ||||||||||||||| |||||||||||  | ||||| ||||||||||||| |||||| ||||||| |  |||||||||    
T  20262716 acgaaattgaactgcaaa----aaaatgcagagtgaaagtttagagtattaaggtaggcgtatgaatcgtctgccaacacagaaacgattcaaggtccaa 20262811  T
Q  219 aagctccctaaaaa 232  Q
     |||||||||||||    
T  20262812 cagctccctaaaaa 20262825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 28771921 - 28772136
Alignment:
Q  11 cacagactcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaaacccac 110  Q
    ||||||||||||||||||  | |||| ||| ||||| | |||  |||||| || | || ||||| ||||||||||||||||   |||||||  ||||||     
T  28771921 cacagactcaaaccctaacaggtgattcaacaaatctgcacaagagtggtaaacaaaacaactccaaacaacactactacgaccagtccagtgaacccat 28772020  T
Q  111 gtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcga 210  Q
    |||||||| ||||| | |  |     ||| ||||||||| |||||||||||||||||| | ||||||||||||||||| | ||| || |||||   || |    
T  28772021 gtgtggatacgaaatcaaact-----aaaaaaaatgcagcgtgaatgtttagagtatcaaggtaggtgtatgaatcgtttgccagcacagaaatcatcca 28772115  T
Q  211 aggtccaaaagctccctaaaa 231  Q
    |||||||| ||||||||||||    
T  28772116 aggtccaacagctccctaaaa 28772136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 26285910 - 26286104
Alignment:
Q  5 gagaagcacagactcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataactctaaacaacactactacggatagtccagcaa 104  Q
    ||||| ||||||||||||||||||    |||||||| |||||| |||| |||||||||||| || |||||||||||| |||||||| || ||  |||  |    
T  26285910 gagaaccacagactcaaaccctaacatgtgatacaacaaatcattacacaagtggttaagaaaacaactctaaacaagactactacagacagatcagtga 26286009  T
Q  105 acccacgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaa 203  Q
    |||| ||||||||| | ||||| |  |||||||||    | |||||||||| |||||||||||| ||||||| ||||||||||||| |||||| |||||    
T  26286010 accctcgtgtggatacaaaaccaaactgcaaaaaa----acgcagagtgaaagtttagagtatcaaagtaggcgtatgaatcgtctgccaacacagaaa 26286104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 51925735 - 51925956
Alignment:
Q  11 cacagactcaaaccctaatggatgatacaataaatcagtacataagtggttaagacaataa-ctctaaacaacactactacggatagtccagcaaaccca 109  Q
    ||||||||||||||||||  |||||||||| |||||||||||   ||||| || | ||  | ||  ||||||||||||||| |  || ||| | ||||||    
T  51925735 cacagactcaaaccctaacagatgatacaacaaatcagtacaagtgtggtaaataaaaacagcttaaaacaacactactacagccagcccaacgaaccca 51925834  T
Q  110 cgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcg 209  Q
    | ||||||| ||||||| |  || ||||   |||||||||  ||||||||||||||||| | ||||| ||||||||||||| |||||| | |||||  |     
T  51925835 catgtggatacgaaaccaaactggaaaa---aaaatgcagcatgaatgtttagagtatcaaggtaggcgtatgaatcgtctgccaacacataaacgaccc 51925931  T
Q  210 aaggtccaaaagctccctaaaaaac 234  Q
    ||||||||| |||||||||||||||    
T  51925932 aaggtccaacagctccctaaaaaac 51925956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 28690314 - 28690213
Alignment:
Q  141 aaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtccaaaagctccctaaaaaacatcaac 240  Q
    |||| |||| ||||||||||| |||||| | ||| | |||||||||| || |||||| | ||||| || ||||||||| | || |||||||||  |||||    
T  28690314 aaaacgcagcgtgaatgtttatagtatcgaggtaagcgtatgaatcgcctgccaacacataaacgatccaaggtccaacaacttcctaaaaaaattcaac 28690215  T
Q  241 aa 242  Q
    ||    
T  28690214 aa 28690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 26130342 - 26130118
Alignment:
Q  14 agactcaaaccctaatggatgatacaataaatcagtacataagtggttaa-gacaataactctaaacaacactactacgg---atagtccagcaaaccca 109  Q
    |||||||||||| || || || ||| | || |||||||| ||||||| || || || |||||||||||||| |||||| |   | || ||||| ||||||    
T  26130342 agactcaaacccaaacgggtggtacgacaattcagtacaaaagtggtaaatgaaaacaactctaaacaacagtactactgcagacagcccagcgaaccca 26130243  T
Q  110 cgtgtggatgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcg 209  Q
    ||||||||| ||||||| |  |||||||||  |    | |||||  ||||||||||||| | ||||| ||||||||||||| |||| | ||||||| |      
T  26130242 cgtgtggatacgaaaccaaactgcaaaaaaaca----ctgagtgggtgtttagagtatctaggtaggcgtatgaatcgtctgccaaaacagaaacgattc 26130147  T
Q  210 aaggtccaaaagctccctaaaaaacatca 238  Q
    ||| ||||| |||||||||||||||||||    
T  26130146 aagatccaacagctccctaaaaaacatca 26130118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 12658729 - 12658521
Alignment:
Q  19 caaaccctaatggatgatacaataaatcagtacataagtggt-taagacaataactctaaacaacactactacggatagtccagcaaacccacgtgtgga 117  Q
    ||||||| || || |||||||| |||||| |||| ||||||| ||| | || |||||||||| | ||||| ||||| | ||||||| | |||||| ||||    
T  12658729 caaacccaaacgggtgatacaaaaaatcaatacacaagtggtataaaaaaacaactctaaaccaaactaccacggacaatccagcacaaccacgtatgga 12658630  T
Q  118 tgcgaaaccgacttgcaaaaaataaaatgcagagtgaatgtttagagtatccaagtaggtgtatgaatcgtctaccaacatagaaacgttcgaaggtcca 217  Q
    ||||||||||| |||||||     ||||||||||||  |||| | |||||  ||||||  ||||| ||| ||| |||||| | ||||| || ||||||||    
T  12658629 tgcgaaaccgaattgcaaa-----aaatgcagagtggttgttcatagtattaaagtagacgtatggatcatctgccaacacataaacgatccaaggtcca 12658535  T
Q  218 aaagctccctaaaa 231  Q
      ||||||||||||    
T  12658534 gcagctccctaaaa 12658521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 25640394 - 25640458
Alignment:
Q  74 ctaaacaa-cactactacggatagtccagcaaacccacgtgtggatgcgaaaccgacttgcaaaa 137  Q
    |||||||| |||||| ||||| | |||||| |||||||||||||  |||||||||| ||||||||    
T  25640394 ctaaacaatcactaccacggacaatccagcgaacccacgtgtgggcgcgaaaccgaattgcaaaa 25640458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University