View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_16 (Length: 296)
Name: NF9940_low_16
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 49665797 - 49665555
Alignment:
| Q |
18 |
atgaggctggtagtagagatcataatgcggacacgtatagttatgcatatatgttggagggttgatatggagggtacggttgcacatgaacagagttgtg |
117 |
Q |
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| T |
49665797 |
atgaggctggtagtagagatcatagtgcggacacgtatagttatgcatatatgttggagggttgatatggagggtacggttgcacatgaacagagttgtg |
49665698 |
T |
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| Q |
118 |
tagagaacgatacgaaaagaaacaaagtgataggtgggaggaggagtataattatatctgaaagcttcacaacttttgttttgcagcagtttgtagagat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49665697 |
tagagaacgatacgaaaagaaacaaagtgataggtgggaggaggagtataattatatctgaaagcttcacaacttttgttttgcagcagtttgtagagat |
49665598 |
T |
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| Q |
218 |
tattgtctctgaaaacacaagtagaagtatcactaccactgtg |
260 |
Q |
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| T |
49665597 |
tattgtctctgaaaacacaagtagaagtagtactgccactgtg |
49665555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 49709354 - 49709112
Alignment:
| Q |
18 |
atgaggctggtagtagagatcataatgcggacacgtatagttatgcatatatgttggagggttgatatggagggtacggttgcacatgaacagagttgtg |
117 |
Q |
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| T |
49709354 |
atgaggctggtagtagagatcatagtgcggacacgtatagttatgcatatatgttggagggttgatatggagggtacggttgcacatgaacagagttgtg |
49709255 |
T |
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| Q |
118 |
tagagaacgatacgaaaagaaacaaagtgataggtgggaggaggagtataattatatctgaaagcttcacaacttttgttttgcagcagtttgtagagat |
217 |
Q |
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| T |
49709254 |
tagagaacgatacgaaaagaaacaaagtgataggtgggaggaggagtataattatatctgaaagcttcacaacttttgttttgcagcagtttgtagagat |
49709155 |
T |
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| Q |
218 |
tattgtctctgaaaacacaagtagaagtatcactaccactgtg |
260 |
Q |
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| T |
49709154 |
tattgtctctgaaaacacaagtagaagtagtactgccactgtg |
49709112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 52 - 260
Target Start/End: Complemental strand, 49210458 - 49210252
Alignment:
| Q |
52 |
gtatagttatgcatatatgttggagggttgatatggagggtacggttgcacatgaacagagttgtgtagagaa-cgatacgaaaagaaacaaagtgatag |
150 |
Q |
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| T |
49210458 |
gtataattatgcatatatgttggagggttgacatggagagtaaggttgcac--gaacaaggttatat-gagtttccatttgaaaagaaacaaagtgagag |
49210362 |
T |
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| Q |
151 |
gtgggaggaggagtataattatatctgaaagcttcacaacttttgttttgcagcagtttgtagagattattgtctctgaaaacacaagtagaagtatcac |
250 |
Q |
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| T |
49210361 |
gtgggaggaagagtataactatatctgaaagcttcacaacttttgttttgcagcattttgtagagattaatgtctctaaaaacacaagtagaagtattac |
49210262 |
T |
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| Q |
251 |
taccactgtg |
260 |
Q |
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|||||||||| |
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| T |
49210261 |
taccactgtg |
49210252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 49864522 - 49864575
Alignment:
| Q |
66 |
atatgttggagggttgatatggagggtacggttgcacatgaacagagttgtgta |
119 |
Q |
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| T |
49864522 |
atatgttggagggctgacatggagggtacggttgcacatgaacaaggttgtgta |
49864575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 279
Target Start/End: Original strand, 41686248 - 41686396
Alignment:
| Q |
131 |
gaaaagaaacaaagtgataggtgggaggaggagtataattatatctgaaagcttcacaacttttgttttgcagcagtttgtagagattattgtctctgaa |
230 |
Q |
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||||||||||||||||| ||||||| ||| ||||||| ||||||||||||| ||||||| || || || | |||||||||||||||||||||||| || |
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| T |
41686248 |
gaaaagaaacaaagtgagaggtggggggaagagtatagttatatctgaaagtttcacaatttctggattaaaacagtttgtagagattattgtctctaaa |
41686347 |
T |
|
| Q |
231 |
aacacaagtagaagtatcactaccactgtgaaaatcaagaggagttaca |
279 |
Q |
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| T |
41686348 |
aacacaattaggagtagcattaccactgtgatactcaggaggacttaca |
41686396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 41686187 - 41686244
Alignment:
| Q |
52 |
gtatagttatgcatatatgttggagggttgatatggagggtacggttgcacatgaaca |
109 |
Q |
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| T |
41686187 |
gtataattatgcatatatgttggacgtttgatatggagagtacggttgcacatgaaca |
41686244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 18317668 - 18317611
Alignment:
| Q |
52 |
gtatagttatgcatatatgttggagggttgatatggagggtacggttgcacatgaaca |
109 |
Q |
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||||| |||||||||||||||||| | ||||||||||| |||| |||||||||||||| |
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| T |
18317668 |
gtataattatgcatatatgttggaagtttgatatggagagtactgttgcacatgaaca |
18317611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 18317607 - 18317550
Alignment:
| Q |
131 |
gaaaagaaacaaagtgataggtgggaggaggagtataattatatctgaaagcttcacaa |
189 |
Q |
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| T |
18317607 |
gaaaagaaacaaagtgagaggtggg-ggaagagtatagttatatttgaaagcttcacaa |
18317550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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