View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_19 (Length: 250)
Name: NF9940_low_19
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 47 - 237
Target Start/End: Complemental strand, 7413297 - 7413107
Alignment:
| Q |
47 |
aaacaaaagaacactcccaagggtaaaaataaattacctatctaatcatacaatctaaaggatttccataccactcgtaaagcaaataaggtaggatgta |
146 |
Q |
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| T |
7413297 |
aaacaaaaaaacactcccaagggtaaaaataaattacctatcttatcatacaatctaaaggatttccataccactcgtaaagcaaataagataggatgta |
7413198 |
T |
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| Q |
147 |
aaatgatttaattttcttaacaaagaaagttaaatccttttacaccctacaaattgactataaagtcgtatgtcaaaccaacaacaatcct |
237 |
Q |
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| T |
7413197 |
aaatgatttaattttcttagcaaagaaggttaaatctttttacaccctacaaattaactataaagttgtatgtcaaaccaacaacaatcct |
7413107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 7413084 - 7413026
Alignment:
| Q |
175 |
gttaaatccttttacaccctacaaattgactataaagtcgtatgtcaaaccaacaacaa |
233 |
Q |
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| T |
7413084 |
gttaaatccatttacaccctacaaattgactataaagtcgtatgccaaaccagcaacaa |
7413026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 7413372 - 7413321
Alignment:
| Q |
1 |
atattcttaataatagaaaaaaggtacatggtagtatctgacctaaaaacaa |
52 |
Q |
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| T |
7413372 |
atattcttaataatagaaaaaaggtatatagtagtatctgacctaaaaacaa |
7413321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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