View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_22 (Length: 239)
Name: NF9940_low_22
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7413431 - 7413580
Alignment:
| Q |
1 |
aaataaggcatgtgaannnnnnnaaaaaaggaatagtatgaagtaatgaaactaataaccataatttctttttatacgcaaaatttattattgaaaatac |
100 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7413431 |
aaataaggcatgtgaactttttaaaaaaaggaacagtatgaagtaatgaaactaataaccataatttatttttatacgcaaaatttattattgaaaatac |
7413530 |
T |
|
| Q |
101 |
aaagagtcctctaattataagtaccgataaattaattaactcttccgtac |
150 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7413531 |
aaagagtcctctaattataagcaccgataaattaattaactcttccgtac |
7413580 |
T |
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