View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_24 (Length: 220)
Name: NF9940_low_24
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 36451138 - 36451265
Alignment:
| Q |
18 |
gattatggtagattaaaagaatgaatttcaccatttttattaaacaaaaa-cttaaaaagaagtagagtatctttggataaatagcctaattaagcactt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
36451138 |
gattatggtagattaaaagaatgaatttcaccatttttattaaacaaaaagcttaaaaagaactagagtttctttggataaatagcctaattaagcactt |
36451237 |
T |
|
| Q |
117 |
ataatatctcagttttccagcagcaaca |
144 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
36451238 |
ataatatctgagttttccagcagcaaca |
36451265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 25970437 - 25970311
Alignment:
| Q |
18 |
gattatggtagattaaaagaatgaatttcaccatttttattaaacaaaaacttaaaaagaagtagagtatctttggataaatagcctaattaagcactta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
25970437 |
gattatggtagattaaaagaatgaatttcatcatttttattaaacaaaagtttaaaaagagctagagtttctttggataaatagcctaattaagcactta |
25970338 |
T |
|
| Q |
118 |
taatatctcagttttccagcagcaaca |
144 |
Q |
| |
|
|||||||| |||||||||||||||||| |
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|
| T |
25970337 |
taatatctgagttttccagcagcaaca |
25970311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 47334534 - 47334408
Alignment:
| Q |
18 |
gattatggtagattaaaagaatgaatttcaccatttttattaaacaaaaacttaaaaagaagtagagtatctttggataaatagcctaattaagcactta |
117 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
47334534 |
gattatggtagattaaaagaatgaatttcatcatttttattaaacaaaagcttaaaaagagctagagtgtctttggataaatagcctaattaagcactta |
47334435 |
T |
|
| Q |
118 |
taatatctcagttttccagcagcaaca |
144 |
Q |
| |
|
|||||||| |||||||||||||||||| |
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|
| T |
47334434 |
taatatctgagttttccagcagcaaca |
47334408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 52468014 - 52468050
Alignment:
| Q |
89 |
tttggataaatagcctaattaagcacttataatatct |
125 |
Q |
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|||||||||||||| |||||||||||||||| ||||| |
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|
| T |
52468014 |
tttggataaatagcttaattaagcacttatagtatct |
52468050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 11493833 - 11493900
Alignment:
| Q |
51 |
tttttattaaacaaaaacttaaaaagaagtagagtatctttggataaatagcctaattaagcacttata |
119 |
Q |
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|||||||||||||||| ||||||| || |||||| | ||||||||| ||| |||||||||||||||| |
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|
| T |
11493833 |
tttttattaaacaaaagattaaaaa-aactagagtgtggttggataaacagcttaattaagcacttata |
11493900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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