View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_3 (Length: 532)
Name: NF9940_low_3
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 183 - 511
Target Start/End: Complemental strand, 663956 - 663628
Alignment:
| Q |
183 |
tagcatgacatatccttattcaacccatacaatttcttaaatctttcactggtgaagaaaatcagccacaactttgatgagttttttgcccttatcagat |
282 |
Q |
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| T |
663956 |
tagcatgacatatccttattcaacccatacaatttcttaaatctttcactggtgaagaaaatcagccacaactttgatgagttttttgcccttatcagat |
663857 |
T |
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| Q |
283 |
tcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattcaacttccccattccaatgactccctttcacagcttcataatacaaaa |
382 |
Q |
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| T |
663856 |
tcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattcaacttccccattccaatgactccttttcacagcttcataatacaaaa |
663757 |
T |
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| Q |
383 |
cagctctgtccctaaaacgatccttaccagcaacagtaacaagcattttagaacaaccaagtagagccaaattaggtgacattggacccaatggattcac |
482 |
Q |
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| T |
663756 |
cagctctgtccctaaaacgatccttaccagcaacagtaacaagcattttagaacaaccaagtaaagccaaattaggtgacattggacccaatggattcac |
663657 |
T |
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| Q |
483 |
atttggatcatctattccaaaaggagcac |
511 |
Q |
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| T |
663656 |
atttggatcatctatcccaaaaggagcac |
663628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 664131 - 664055
Alignment:
| Q |
18 |
agacacgcaagacaaaaacgacatagtagaaggacacgtaagacataaacaacatagtaaaaggtgctatatgtgtg |
94 |
Q |
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| T |
664131 |
agacacgcaagataaaaacgacatagtaaaatgacacgtaagacgtagacaacatgataaaaggtgctatatgtgtg |
664055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 47301960 - 47301902
Alignment:
| Q |
277 |
tcagattcaggatggaccatataataacaatgatcttcatcttcttcttcaaaaaattc |
335 |
Q |
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| T |
47301960 |
tcagattcaggatgaaagatatgataaacatgatcttcatcttcttcttcaaacaattc |
47301902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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