View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9940_low_4 (Length: 509)

Name: NF9940_low_4
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9940_low_4
NF9940_low_4
[»] chr1 (4 HSPs)
chr1 (20-492)||(28286875-28287350)
chr1 (20-320)||(15941935-15942235)
chr1 (409-477)||(47978368-47978436)
chr1 (417-477)||(18325331-18325391)
[»] chr4 (7 HSPs)
chr4 (400-478)||(33843793-33843871)
chr4 (415-468)||(26617281-26617334)
chr4 (417-474)||(17898071-17898127)
chr4 (402-446)||(32238058-32238102)
chr4 (402-470)||(42944897-42944965)
chr4 (400-468)||(50357971-50358039)
chr4 (402-446)||(54153087-54153131)
[»] chr3 (9 HSPs)
chr3 (400-444)||(5407016-5407060)
chr3 (399-470)||(35058444-35058515)
chr3 (400-478)||(51285652-51285730)
chr3 (402-478)||(36364934-36365010)
chr3 (417-478)||(32112076-32112137)
chr3 (402-442)||(14022091-14022131)
chr3 (417-469)||(42644297-42644349)
chr3 (403-443)||(46018706-46018746)
chr3 (402-446)||(55154559-55154603)
[»] chr2 (5 HSPs)
chr2 (409-468)||(4894091-4894150)
chr2 (417-478)||(4007145-4007205)
chr2 (409-478)||(10918638-10918707)
chr2 (402-446)||(14821229-14821273)
chr2 (400-452)||(29968932-29968984)
[»] chr6 (9 HSPs)
chr6 (400-474)||(28466909-28466983)
chr6 (400-474)||(34736750-34736824)
chr6 (409-444)||(34026419-34026454)
chr6 (417-479)||(26274641-26274702)
chr6 (399-452)||(2234141-2234194)
chr6 (417-474)||(10874222-10874279)
chr6 (409-478)||(34620968-34621037)
chr6 (409-478)||(34748405-34748474)
chr6 (404-444)||(882802-882842)
[»] chr5 (5 HSPs)
chr5 (402-443)||(18637400-18637441)
chr5 (417-478)||(5465412-5465473)
chr5 (418-463)||(7667753-7667798)
chr5 (400-449)||(15368583-15368632)
chr5 (415-463)||(19784868-19784916)
[»] chr7 (5 HSPs)
chr7 (400-468)||(29829294-29829362)
chr7 (400-478)||(33853409-33853487)
chr7 (404-478)||(40561687-40561761)
chr7 (404-473)||(15050380-15050449)
chr7 (402-478)||(45557447-45557523)
[»] chr8 (2 HSPs)
chr8 (400-444)||(2778629-2778673)
chr8 (430-474)||(36779429-36779473)


Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 20 - 492
Target Start/End: Original strand, 28286875 - 28287350
Alignment:
Q  20 caagatgggtcccgaagcggtagccatgaaagcaaaaactcaaaaaacaaacagcaacccattcgagtcaatctggtcacgtaggaaattcgatgtaatg 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28286875 caagatgggtcccgaagcggtagccatgaaagcaaaagctcaaaaaacaaacagcaacccattcgagtcaatctggtcacgtaggaaattcgatgtaatg 28286974  T
Q  120 ggtcagaagcggaaaggagataccaaacgaatggggttggcacgttctcttgctattgagaagaggaagaagacgttgcttaaagagtatgaacagagta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28286975 ggtcagaagcggaaaggagataccaaacgaatggggttggcacgttctcttgctattgagaagaggaagaagacgttgcttaaagagtatgaacagagta 28287074  T
Q  220 cgaaatcttcggagtttattgatagaagaattggtgagaatgatgaagggcttgatgattttggtaaagctattttgagatcgcagcgggaacgtcaggt 319  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28287075 cgaaatcttccgagtttattgatagaagaattggtgagaatgatgaagggcttgatgattttggtaaagctattttgagatcgcagcgggaacgtcaggt 28287174  T
Q  320 agtagctatattgata---nnnnnnnacagcttatagcttaaaatgcttatcatgcttaatgtatgtttg-ttttgcatccaccaaaattgactttgagt 415  Q
    |||||||||||| |||          |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28287175 agtagctatattcatatattttttttacagcttatagcttaaaa-gcttatcatgcttaatgtatgtttgcttttgcatccaccaaaattgactttgagt 28287273  T
Q  416 gaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgtagtaaaagttagttg 492  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28287274 gaattgattctagctaaaagtgagttgaatggaaactagtttatgtttagatatatttatgtagtaaaagttagttg 28287350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 15941935 - 15942235
Alignment:
Q  20 caagatgggtcccgaagcggtagccatgaaagcaaaaactcaaaaaacaaacagcaacccattcgagtcaatctggtcacgtaggaaattcgatgtaatg 119  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  15941935 caagatgggtcccgaagcagtagccatgaaagcaaaagctcaaaaaacgaacaccaatccattcgagtcaatctggtcacgtaggaaattcgaagtaatg 15942034  T
Q  120 ggtcagaagcggaaaggagataccaaacgaatggggttggcacgttctcttgctattgagaagaggaagaagacgttgcttaaagagtatgaacagagta 219  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||    
T  15942035 ggtcagaagcgtaaaggagataccaaacgaatggggttggctcgttctcttgctgttgagaagaggaagaagacgttgcttaaggagtatgagcagagta 15942134  T
Q  220 cgaaatcttcggagtttattgatagaagaattggtgagaatgatgaagggcttgatgattttggtaaagctattttgagatcgcagcgggaacgtcaggt 319  Q
    | ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15942135 ctaaatcgtcggagtttattgatagacgaatcggtgagaatgatgaagggcttgatgattttggtaaagctattttgagatcgcagcgggaacgtcaggt 15942234  T
Q  320 a 320  Q
    |    
T  15942235 a 15942235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 477
Target Start/End: Original strand, 47978368 - 47978436
Alignment:
Q  409 tttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgt 477  Q
    |||||||||||||||| | | ||||||||||||||||| |||||  |||||| || ||| |||||||||    
T  47978368 tttgagtgaattgattttgggtaaaagtgagttgaatgtaaagtgatttatggttggatgtatttatgt 47978436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 477
Target Start/End: Original strand, 18325331 - 18325391
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgt 477  Q
    |||||||| ||  ||||||||||||||||| ||| | |||| |||||||||| ||||||||    
T  18325331 aattgattttacataaaagtgagttgaatgtaaaatggtttctgtttagataaatttatgt 18325391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 33843871 - 33843793
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||||| ||||| |||||||||||| ||||||||||||||| ||| |||||  ||||||||| |||||||| |||||    
T  33843871 aaaattgattttgattgaattgattctggctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgta 33843793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 468
Target Start/End: Original strand, 26617281 - 26617334
Alignment:
Q  415 tgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagata 468  Q
    |||||||||| ||| ||||||||||||||||| ||||||||| |||||| ||||    
T  26617281 tgaattgattttagttaaaagtgagttgaatgtaaagtagttcatgtttcgata 26617334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 474
Target Start/End: Original strand, 17898071 - 17898127
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatattta 474  Q
    |||||||||| ||| ||||||||||||||| |||||  ||||||||| ||||||||||    
T  17898071 aattgattct-gctgaaagtgagttgaatgtaaagtgatttatgtttggatatattta 17898127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Original strand, 32238058 - 32238102
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttgaatg 446  Q
    |||||| |||||||||||||||| | | |||||||||||||||||    
T  32238058 aattgagtttgagtgaattgattttggttaaaagtgagttgaatg 32238102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 470
Target Start/End: Original strand, 42944897 - 42944965
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatata 470  Q
    |||||| |||||| ||||||||| | | |||||||||||||||||  || |  ||||||||||||||||    
T  42944897 aattgattttgagagaattgattttggttaaaagtgagttgaatgtgaattgatttatgtttagatata 42944965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 50357971 - 50358039
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagata 468  Q
    |||||||| ||| | ||| |||||| ||| ||||||||||||||||| ||||| || ||||||| ||||    
T  50357971 aaaattgattttaaatgagttgattttagttaaaagtgagttgaatgcaaagtggtctatgtttggata 50358039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 54153131 - 54153087
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttgaatg 446  Q
    |||||| |||||||||||||||| | | |||||||||||||||||    
T  54153131 aattgagtttgagtgaattgattttggttaaaagtgagttgaatg 54153087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 5407060 - 5407016
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaa 444  Q
    |||||||| |||||||||||||||||||||||||| |||||||||    
T  5407060 aaaattgattttgagtgaattgattctagctaaaattgagttgaa 5407016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 35058515 - 35058444
Alignment:
Q  399 caaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatata 470  Q
    ||||||||| |||||||| |||||||||| ||||||||||||||||   |||||  ||||||||| ||||||    
T  35058515 caaaattgattttgagtggattgattctaactaaaagtgagttgaagataaagtgctttatgtttggatata 35058444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 51285730 - 51285652
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||||| |||||||||||| ||| | ||||||||||||||||||| |||||| || ||| || |||| ||| |||||    
T  51285730 aaaattgattttgagtgaatttattatggctaaaagtgagttgaatgtaaagtaattcatgcttggatacattcatgta 51285652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 36365010 - 36364934
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||| ||||||| |||| ||| | | ||||||| ||||||||| ||||||||||||||||  | |||||||||||    
T  36365010 aattgattttgagtaaattaattttggataaaagtaagttgaatgtaaagtagtttatgtttgcaaatatttatgta 36364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 478
Target Start/End: Complemental strand, 32112137 - 32112076
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||||| | | ||||| ||||||||||| |||||| ||||||||| ||| ||||||||||    
T  32112137 aattgattatggataaaaatgagttgaatgaaaagtaatttatgtttggatttatttatgta 32112076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 442
Target Start/End: Complemental strand, 14022131 - 14022091
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttg 442  Q
    |||||| |||||||||||| |||||| ||||||||||||||    
T  14022131 aattgattttgagtgaatttattctatctaaaagtgagttg 14022091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 42644349 - 42644297
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatat 469  Q
    |||||||| ||| ||||||||||||||||| |||||  ||||||||| |||||    
T  42644349 aattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttggatat 42644297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 443
Target Start/End: Complemental strand, 46018746 - 46018706
Alignment:
Q  403 attgactttgagtgaattgattctagctaaaagtgagttga 443  Q
    ||||| |||||||||||||||||||||||||  ||||||||    
T  46018746 attgattttgagtgaattgattctagctaaagatgagttga 46018706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 55154603 - 55154559
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttgaatg 446  Q
    |||||| |||||| ||||||||| ||| |||||||||||||||||    
T  55154603 aattgagtttgagagaattgattttagttaaaagtgagttgaatg 55154559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 409 - 468
Target Start/End: Original strand, 4894091 - 4894150
Alignment:
Q  409 tttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagata 468  Q
    |||||||||||||||||||||||||| | ||||||| | |||||  ||||||||||||||    
T  4894091 tttgagtgaattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagata 4894150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 4007145 - 4007205
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||||| | | ||||||||||||||||| |||||| ||||||||| ||| ||||||||||    
T  4007145 aattgattatggataaaagtgagttgaatgaaaagtaatttatgttt-gatgtatttatgta 4007205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 478
Target Start/End: Complemental strand, 10918707 - 10918638
Alignment:
Q  409 tttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    ||||| |||||||||| | | ||||||||||||||||| |||||  ||||||||| ||| ||||| ||||    
T  10918707 tttgactgaattgattttggataaaagtgagttgaatgtaaagtgatttatgtttggatgtatttgtgta 10918638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 14821273 - 14821229
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttgaatg 446  Q
    |||||| |||||||||||||||| ||| |||||||||||| ||||    
T  14821273 aattgagtttgagtgaattgattttagttaaaagtgagtttaatg 14821229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 452
Target Start/End: Original strand, 29968932 - 29968984
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagt 452  Q
    |||| ||| ||||| |||||||||| ||| ||||||||||||||||| |||||    
T  29968932 aaaactgattttgaatgaattgattttagttaaaagtgagttgaatgtaaagt 29968984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 28466909 - 28466983
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatattta 474  Q
    |||| ||| |||||||||||||||||| ||||||| ||||||||| | | ||| |||||||||| |||| |||||    
T  28466909 aaaaatgattttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttggatacattta 28466983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 34736824 - 34736750
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatattta 474  Q
    |||| ||| |||||||||||||||||| ||||||| ||||||||| | | ||| |||||||||| |||| |||||    
T  34736824 aaaaatgattttgagtgaattgattctggctaaaattgagttgaaggtatagtggtttatgtttggatacattta 34736750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 444
Target Start/End: Original strand, 34026419 - 34026454
Alignment:
Q  409 tttgagtgaattgattctagctaaaagtgagttgaa 444  Q
    |||||||||||||||||| |||||||||||||||||    
T  34026419 tttgagtgaattgattctggctaaaagtgagttgaa 34026454  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 26274641 - 26274702
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgtag 479  Q
    ||||||||||  ||||||||||||||||| | || | ||||||||||||||| ||||||||||    
T  26274641 aattgattctgactaaaagtgagttgaat-gtaattcgtttatgtttagataaatttatgtag 26274702  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 2234141 - 2234194
Alignment:
Q  399 caaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagt 452  Q
    ||||||||| ||||| |||||||||| ||  ||||||||||||||||| |||||    
T  2234141 caaaattgattttgaatgaattgattttacttaaaagtgagttgaatgtaaagt 2234194  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 474
Target Start/End: Original strand, 10874222 - 10874279
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatattta 474  Q
    |||||||| ||| |||| ||||||||||||  |||| |||||||||| ||||||||||    
T  10874222 aattgattttaggtaaatgtgagttgaatgtgaagtggtttatgtttggatatattta 10874279  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 478
Target Start/End: Complemental strand, 34621037 - 34620968
Alignment:
Q  409 tttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    ||||||||||| |||||| |||| || ||||||||| | |||||  ||||||||| |||| |||||||||    
T  34621037 tttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgta 34620968  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 478
Target Start/End: Complemental strand, 34748474 - 34748405
Alignment:
Q  409 tttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    ||||||||||| |||||| |||| || ||||||||| | |||||  ||||||||| |||| |||||||||    
T  34748474 tttgagtgaatggattctggctagaattgagttgaaggtaaagtgatttatgtttggatacatttatgta 34748405  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 882842 - 882802
Alignment:
Q  404 ttgactttgagtgaattgattctagctaaaagtgagttgaa 444  Q
    |||| |||||||||||||||||||| ||||| |||||||||    
T  882842 ttgagtttgagtgaattgattctagttaaaattgagttgaa 882802  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 18637441 - 18637400
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttga 443  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  18637441 aattgattttgagtgaattgattctaactaaaagtgagttga 18637400  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 478
Target Start/End: Original strand, 5465412 - 5465473
Alignment:
Q  417 aattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||||| ||| ||||||||| ||||||| ||| |  ||||||||||||| ||||||||||    
T  5465412 aattgattttagataaaagtgaattgaatgaaaaatgatttatgtttagatgtatttatgta 5465473  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 7667798 - 7667753
Alignment:
Q  418 attgattctagctaaaagtgagttgaatggaaagtagtttatgttt 463  Q
    |||||||||||||| |||||||||||||| |||||  |||||||||    
T  7667798 attgattctagctataagtgagttgaatgtaaagtgatttatgttt 7667753  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Complemental strand, 15368632 - 15368583
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaa 449  Q
    |||||||| |||||||||||||||||| ||| ||| ||||||||| ||||    
T  15368632 aaaattgattttgagtgaattgattctggctgaaattgagttgaagggaa 15368583  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 463
Target Start/End: Complemental strand, 19784916 - 19784868
Alignment:
Q  415 tgaattgattctagctaaaagtgagttgaatggaaagtagtttatgttt 463  Q
    |||||||||| | | ||||||||||||||||| ||||| ||||||||||    
T  19784916 tgaattgattttggttaaaagtgagttgaatgtaaagtggtttatgttt 19784868  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 468
Target Start/End: Original strand, 29829294 - 29829362
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagata 468  Q
    |||||||| | ||| |||||||||||| ||||||| ||||||||||| |||||  ||||||||| ||||    
T  29829294 aaaattgattctgaatgaattgattctggctaaaaatgagttgaatgtaaagtgatttatgtttggata 29829362  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 478
Target Start/End: Original strand, 33853409 - 33853487
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||||| ||| |||||||||||||| ||||| |||||||||||   |||||  ||||||||| |||| ||| |||||    
T  33853409 aaaattgatttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttggatacattcatgta 33853487  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 478
Target Start/End: Original strand, 40561687 - 40561761
Alignment:
Q  404 ttgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||| ||||||||||||||||||||  |||| ||||||||| | |||||  ||||||||| |||| ||| |||||    
T  40561687 ttgattttgagtgaattgattctagtaaaaattgagttgaaagtaaagtgatttatgtttggatacattcatgta 40561761  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 473
Target Start/End: Complemental strand, 15050449 - 15050380
Alignment:
Q  404 ttgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatattt 473  Q
    |||| ||||||| |||||||||||||||||| ||| || |  | |||||| ||||||||| |||||||||    
T  15050449 ttgattttgagttaattgattctagctaaaaatgaatttagggtaaagtaatttatgtttggatatattt 15050380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 45557523 - 45557447
Alignment:
Q  402 aattgactttgagtgaattgattctagctaaaagtgagttgaatggaaagtagtttatgtttagatatatttatgta 478  Q
    |||||| ||||| ||||||||||||  |||||||||||||||| | |||||  ||| ||||| |||| ||| |||||    
T  45557523 aattgattttgaatgaattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgta 45557447  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 2778673 - 2778629
Alignment:
Q  400 aaaattgactttgagtgaattgattctagctaaaagtgagttgaa 444  Q
    |||||||| |||  ||||| |||||||||||||||||||||||||    
T  2778673 aaaattgattttatgtgaactgattctagctaaaagtgagttgaa 2778629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 36779473 - 36779429
Alignment:
Q  430 taaaagtgagttgaatggaaagtagtttatgtttagatatattta 474  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||||    
T  36779473 taaaagtgagttgaatgtaaagtaatttatgtttggatattttta 36779429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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