View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9940_low_5 (Length: 490)
Name: NF9940_low_5
Description: NF9940
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9940_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Complemental strand, 39279080 - 39278621
Alignment:
| Q |
18 |
atcagccctactctcggcatcaagtacagtttcttttagttcagcaatatgagttttcgtattacttacttcagcacatgaggcatcatacatattttga |
117 |
Q |
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| T |
39279080 |
atcagccctactctcggcatcaagtacagtttcttttagttcagcaatatgagttttcgtattacttacttcagcacatgaggcatcatacatattttga |
39278981 |
T |
|
| Q |
118 |
tattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctcttagagcgaagatctcag |
217 |
Q |
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| T |
39278980 |
tattcattcgaagaggacttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctcttagagcgaagacctcag |
39278881 |
T |
|
| Q |
218 |
gatcagaagggatttttgtatcttcggcgtcttttgaactagcttctgaaccatttgtctgacctataagagagacatttaattcaccggtgctgctttc |
317 |
Q |
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| T |
39278880 |
gatcagaagggatttgtgtatcttcagcgtcttttgaactagcttctgaaccatttgtctgacctataagagagacatttaattcaccggtgctgctttc |
39278781 |
T |
|
| Q |
318 |
aatcttgttcaaaataatatccctggtatttaattgttctacaaaagtttcgagcttagcttgaagctcggattcacgccgacttaaaccattcaaattg |
417 |
Q |
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| T |
39278780 |
aatcttgttcaaaataatatccctggtatttaattgttctacaaaagtttcgagcttagcttgaagctcggattcacgccgacttaaaccattcaaattg |
39278681 |
T |
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| Q |
418 |
aaatgagaaatctggagtctactcaacagactttttgaaattcccatcagaatctgatgt |
477 |
Q |
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| T |
39278680 |
aaatgagaaatctggagtctactcaacagactttttgaaattcccatcagaatctcatgt |
39278621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 115 - 339
Target Start/End: Original strand, 31466367 - 31466590
Alignment:
| Q |
115 |
tgatattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctcttagagcgaagatct |
214 |
Q |
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||||||||| | |||| ||| || |||||| ||| ||||||| |||||| | | |||||||||||||||| |||||||| |||||||| ||||| || |
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| T |
31466367 |
tgatattcaatagaagtggactttacattcaatagctgaattttagaatccatcaactgcttctcaagtaaatacaccttatctcttagaatgaagacct |
31466466 |
T |
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| Q |
215 |
caggatcagaagggatttttgtatcttcggcgtcttttgaactagcttctgaaccatttgtctgacctataagagagacatttaattcaccggtgctgct |
314 |
Q |
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| T |
31466467 |
cagaatcggaagccattcgtttatcttcagcgtcttttgaattagcttctgcaccatgtgtttgacctagaagag-ggtgtttaattcaccggtgctgct |
31466565 |
T |
|
| Q |
315 |
ttcaatcttgttcaaaataatatcc |
339 |
Q |
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|||| || |||||| |||||||||| |
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| T |
31466566 |
ttcagtcgtgttcataataatatcc |
31466590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 31466111 - 31466202
Alignment:
| Q |
111 |
attttgatattcattcgaagaggatttcacattccgtagatgaatttcagaatcttttagctgcttctcaagtaaagacaccttacctctta |
202 |
Q |
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||||||||||| || |||||| || ||||||||||||| |||| ||||||||||||| |||| ||||| ||||||||||||||| |||||| |
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| T |
31466111 |
attttgatatttatacgaagatgacttcacattccgtatgtgaaattcagaatcttttcgctggttctcgagtaaagacaccttatctctta |
31466202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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